Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2208

Experiment: pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 5.5
2,472,766	+		Rv2208	0.36	-0.3
2,472,767	-		Rv2208	0.37	-2.4
2,472,938	+		Rv2208	0.59	-1.0
2,472,939	-		Rv2208	0.59	-2.2
2,473,240	+				-0.2
2,473,240	+				-0.2
2,473,241	-				-0.1
2,473,268	-				-0.8
2,473,382	+				+0.1
2,473,383	-				+1.0
2,473,384	+				+0.9
2,473,384	+				-0.1
2,473,384	+				+0.2
2,473,384	+				+0.7
2,473,384	+				+0.0
2,473,385	-				+0.2
2,473,385	-				-0.9
2,473,385	-				+0.2
2,473,386	+				+0.0
2,473,386	+				-0.2
2,473,386	+				-0.2
2,473,386	+				+1.0
2,473,386	+				-0.8
2,473,386	+				-0.2
2,473,387	-				+2.2
2,473,387	-				-0.2
2,473,387	-				+0.1
2,473,387	-				+0.1
2,473,387	-				-0.2
2,473,478	+				-1.0
2,473,478	+				-0.2
2,473,479	-				-0.3
2,473,516	-				-1.7
2,473,793	+		Rv2209	0.26	+0.2
2,473,842	+		Rv2209	0.29	-0.7
2,473,843	-		Rv2209	0.29	-0.4
2,474,059	-		Rv2209	0.43	-0.9
2,474,061	-		Rv2209	0.43	+0.0
2,474,109	-		Rv2209	0.46	-0.7
2,474,111	-		Rv2209	0.46	+0.6
2,474,111	-		Rv2209	0.46	+0.1
2,474,120	+		Rv2209	0.47	-0.1
2,474,120	+		Rv2209	0.47	+0.6
2,474,120	+		Rv2209	0.47	+1.2
2,474,120	+		Rv2209	0.47	+0.4
2,474,120	+		Rv2209	0.47	-0.7
2,474,120	+		Rv2209	0.47	-0.4
2,474,121	-		Rv2209	0.47	+0.0
2,474,121	-		Rv2209	0.47	-0.5
2,474,121	-		Rv2209	0.47	+0.0