Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2055c

Experiment: pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 5.5
2,313,114	+				-0.1
2,313,115	-				-1.5
2,313,124	+				-0.1
2,313,124	+				+0.7
2,313,125	-				-0.1
2,313,136	-				-0.7
2,313,250	+		Rv2054	0.18	+0.6
2,313,250	+		Rv2054	0.18	+0.4
2,313,251	-		Rv2054	0.18	-1.2
2,313,284	+		Rv2054	0.22	-0.7
2,313,284	+		Rv2054	0.22	-0.5
2,313,285	-		Rv2054	0.22	+0.1
2,313,285	-		Rv2054	0.22	+0.4
2,313,285	-		Rv2054	0.22	+0.1
2,313,285	-		Rv2054	0.22	+1.6
2,313,308	+		Rv2054	0.26	+0.3
2,313,308	+		Rv2054	0.26	-0.2
2,313,308	+		Rv2054	0.26	-0.8
2,313,309	-		Rv2054	0.26	-1.0
2,313,334	+		Rv2054	0.29	+0.6
2,313,334	+		Rv2054	0.29	+0.6
2,313,335	-		Rv2054	0.29	-1.4
2,313,335	-		Rv2054	0.29	-0.4
2,313,335	-		Rv2054	0.29	-0.5
2,313,521	+		Rv2054	0.55	-1.4
2,313,521	+		Rv2054	0.55	+0.6
2,313,522	-		Rv2054	0.56	-0.3
2,313,558	+		Rv2054	0.61	+0.3
2,313,631	-		Rv2054	0.71	-0.0
2,313,634	+		Rv2054	0.71	-0.5
2,313,634	+		Rv2054	0.71	-0.3
2,313,635	-		Rv2054	0.71	-1.5
2,313,635	-		Rv2054	0.71	-1.2
2,313,635	-		Rv2054	0.71	-1.1
2,313,635	-		Rv2054	0.71	-0.0
2,313,750	-		Rv2054	0.88	+0.6
2,313,836	+				-0.6
2,313,836	+				+0.1
2,313,836	+				-0.7
2,313,837	-				-0.8
2,313,837	-				+2.2
2,313,840	+				-0.1
2,313,840	+				-0.4
2,313,841	-				-0.5
2,313,841	-				-0.3
2,313,841	-				-0.9
2,313,953	-				-0.4
2,313,953	-				-0.5
2,313,953	-				-0.1
2,313,953	-				-0.3
2,314,131	-		Rv2055c	0.16	-1.1
2,314,271	+		Rv2055c	0.69	-1.4
2,314,356	-				+0.8
2,314,738	+		Rv2057c	0.47	-0.4
2,314,739	-		Rv2057c	0.47	+0.6
2,314,761	+		Rv2057c	0.61	-0.1
2,314,761	+		Rv2057c	0.61	-0.9
2,314,761	+		Rv2057c	0.61	-0.6
2,314,761	+		Rv2057c	0.61	-0.4
2,314,894	+		Rv2058c	0.29	+0.6
2,314,895	-		Rv2058c	0.30	-1.3
2,314,895	-		Rv2058c	0.30	+0.0
2,314,895	-		Rv2058c	0.30	-0.8
2,314,895	-		Rv2058c	0.30	+0.3
2,314,895	-		Rv2058c	0.30	-0.6
2,314,896	+		Rv2058c	0.30	-1.4
2,314,896	+		Rv2058c	0.30	+0.4
2,314,896	+		Rv2058c	0.30	+0.4
2,314,897	-		Rv2058c	0.30	-0.9
2,314,897	-		Rv2058c	0.30	+0.2
2,314,897	-		Rv2058c	0.30	+1.1
2,314,897	-		Rv2058c	0.30	-0.0
2,314,946	+		Rv2058c	0.51	-1.1
2,314,946	+		Rv2058c	0.51	-1.5
2,314,947	-		Rv2058c	0.51	-0.5
2,314,949	+		Rv2058c	0.52	-0.7
2,314,950	-		Rv2058c	0.53	+1.2
2,314,950	-		Rv2058c	0.53	-1.0
2,315,116	-				-0.9
2,315,116	-				+0.0
2,315,127	+				+0.4
2,315,127	+				+0.3
2,315,128	-				-2.2
2,315,128	-				-0.4