Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1791

Experiment: pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 5.5
2,029,082	+		Rv1790	0.62	-0.4
2,029,383	+				+0.3
2,029,383	+				-0.2
2,029,408	+				-0.3
2,029,475	+				-0.6
2,029,476	-				-0.6
2,029,476	-				+0.7
2,029,561	-				-0.4
2,029,613	+				+1.6
2,029,613	+				-1.2
2,029,661	-				-2.3
2,029,759	+				-0.5
2,029,760	-				-0.4
2,029,853	+				+0.1
2,029,853	+				+0.5
2,029,853	+				-1.4
2,029,883	+				+0.4
2,029,883	+				-0.3
2,029,963	+		Rv1791	0.20	-2.4
2,030,043	+		Rv1791	0.46	+1.1
2,030,087	+		Rv1791	0.61	-1.7
2,030,302	+				-0.1
2,030,302	+				-1.1
2,030,328	+				-0.7
2,030,329	-				-1.8
2,030,329	-				+1.6
2,030,329	-				+1.5
2,030,332	-				-0.1
2,030,332	-				-1.2
2,030,599	+		Rv1792	0.85	-1.0
2,030,641	+				-1.2
2,030,693	+				-0.9
2,030,693	+				-1.5
2,030,693	+				-1.1
2,030,702	+				-0.4
2,030,702	+				+0.6
2,031,042	+				-1.0
2,031,061	+				-0.6