Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1640c

Experiment: pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 5.5
1,847,576	-		Rv1639c	0.40	-0.3
1,847,674	-		Rv1639c	0.47	+1.7
1,847,858	-		Rv1639c	0.59	+0.2
1,848,038	-		Rv1639c	0.71	-0.3
1,848,232	+		Rv1639c	0.85	-0.2
1,848,233	-		Rv1639c	0.85	-0.0
1,848,233	-		Rv1639c	0.85	-0.6
1,848,396	+				-0.6
1,848,397	-				-0.5
1,848,397	-				+0.7
1,848,629	+				-1.3
1,848,629	+				-2.7
1,848,629	+				+1.1
1,848,630	-				-1.1
1,848,861	-				-0.4
1,848,861	-				-0.9
1,849,221	-		Rv1640c	0.20	-2.7
1,849,231	+		Rv1640c	0.20	-2.1
1,849,374	-		Rv1640c	0.24	-0.7
1,849,596	+		Rv1640c	0.31	-0.8
1,849,620	+		Rv1640c	0.31	-2.0
1,849,831	+		Rv1640c	0.37	-1.4
1,849,831	+		Rv1640c	0.37	+0.9
1,850,225	+		Rv1640c	0.49	-1.6
1,850,249	+		Rv1640c	0.49	-1.9
1,850,249	+		Rv1640c	0.49	-2.8
1,850,445	+		Rv1640c	0.55	-1.6
1,850,907	-		Rv1640c	0.68	-2.3
1,851,009	-		Rv1640c	0.71	-1.4
1,851,009	-		Rv1640c	0.71	+0.7
1,851,016	-		Rv1640c	0.71	-1.4
1,851,016	-		Rv1640c	0.71	-1.4
1,851,163	+		Rv1640c	0.75	-2.1
1,851,300	-		Rv1640c	0.79	-0.4
1,851,322	+		Rv1640c	0.80	-3.0
1,851,574	-		Rv1640c	0.87	-1.5
1,851,684	-				-0.1
1,851,749	-				-1.3
1,851,866	-				-1.1
1,851,907	+				+0.1
1,851,908	-				-0.6
1,851,958	-				-0.8
1,851,979	-				+0.6
1,852,876	+				+0.3