Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1355c

Experiment: pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 5.5
1,521,226	+		Rv1354c	0.65	+0.6
1,521,385	-		Rv1354c	0.74	-0.9
1,521,658	+		Rv1354c	0.88	-1.2
1,522,625	-		Rv1355c	0.34	-0.3
1,523,121	-		Rv1355c	0.58	-0.0
1,523,321	-		Rv1355c	0.67	-0.9
1,523,493	-		Rv1355c	0.75	-0.9
1,523,493	-		Rv1355c	0.75	-0.7
1,523,493	-		Rv1355c	0.75	-2.1
1,523,669	-		Rv1355c	0.83	-1.1
1,523,853	+				-0.0
1,523,853	+				-1.2
1,524,077	+				+0.1
1,524,224	+		Rv1356c	0.25	-2.6
1,524,224	+		Rv1356c	0.25	+0.5
1,524,225	-		Rv1356c	0.25	-1.8
1,524,227	+		Rv1356c	0.25	+0.8
1,524,228	-		Rv1356c	0.25	-1.5
1,524,228	-		Rv1356c	0.25	-0.3
1,524,370	+		Rv1356c	0.43	+0.3
1,524,625	-		Rv1356c	0.75	-0.2
1,524,649	-		Rv1356c	0.78	-0.5
1,524,653	-		Rv1356c	0.79	+0.7
1,524,686	+		Rv1356c	0.83	+0.9
1,524,687	-		Rv1356c	0.83	+1.1
1,524,838	+				+0.4