Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1209

Experiment: pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 5.5
1,353,139	+				+0.9
1,353,176	-				-0.4
1,353,176	-				-0.7
1,353,352	+		Rv1209	0.53	-1.7
1,353,410	+		Rv1209	0.69	-0.9
1,353,411	-		Rv1209	0.69	-0.9
1,353,411	-		Rv1209	0.69	-1.4
1,353,411	-		Rv1209	0.69	-0.8
1,353,588	+		Rv1210	0.11	-1.0
1,353,588	+		Rv1210	0.11	-0.1
1,353,597	+		Rv1210	0.12	-0.3
1,353,695	-		Rv1210	0.28	+1.2
1,353,763	-		Rv1210	0.39	-0.7
1,353,787	+		Rv1210	0.43	-0.6
1,353,883	+		Rv1210	0.59	-0.4
1,353,883	+		Rv1210	0.59	+0.3
1,353,974	+		Rv1210	0.73	+0.3
1,353,975	-		Rv1210	0.74	+0.7
1,353,975	-		Rv1210	0.74	-0.0
1,354,029	+		Rv1210	0.82	+1.3
1,354,029	+		Rv1210	0.82	+0.5
1,354,068	-		Rv1210	0.89	+0.4
1,354,068	-		Rv1210	0.89	-1.9
1,354,464	+				+0.9
1,354,468	+				+0.1
1,354,469	-				-0.7
1,354,517	+				-0.2