Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1102c

Experiment: pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 5.5
1,229,682	-		Rv1101c	0.25	+0.4
1,229,682	-		Rv1101c	0.25	-0.0
1,229,851	+		Rv1101c	0.40	+0.0
1,229,851	+		Rv1101c	0.40	-2.5
1,229,945	-		Rv1101c	0.48	-0.3
1,229,945	-		Rv1101c	0.48	-0.4
1,229,997	+		Rv1101c	0.52	-0.2
1,229,997	+		Rv1101c	0.52	+1.8
1,229,997	+		Rv1101c	0.52	-0.5
1,229,998	-		Rv1101c	0.52	+0.8
1,230,034	+		Rv1101c	0.56	-0.2
1,230,034	+		Rv1101c	0.56	+0.7
1,230,035	-		Rv1101c	0.56	+0.1
1,230,035	-		Rv1101c	0.56	-0.0
1,230,035	-		Rv1101c	0.56	+0.6
1,230,035	-		Rv1101c	0.56	+1.6
1,230,161	+		Rv1101c	0.66	-1.2
1,230,162	-		Rv1101c	0.67	+1.6
1,230,422	-		Rv1101c	0.89	-0.3
1,230,457	+				+0.1
1,230,458	-				+0.1
1,230,458	-				-1.3
1,230,458	-				+0.1
1,230,472	+				-0.5
1,230,473	-				-2.9
1,230,473	-				+1.6
1,230,610	+				+0.1
1,230,611	-				-0.5
1,230,611	-				-0.5
1,230,611	-				-2.4
1,230,655	+				+1.1
1,230,656	-				-1.4
1,230,661	+				+0.8
1,230,661	+				-0.3
1,230,662	-				-1.1
1,230,662	-				+0.9
1,230,662	-				-1.0
1,230,662	-				-0.8
1,230,709	-		Rv1102c	0.16	-2.1
1,230,903	+		Rv1102c	0.78	-0.2
1,230,904	-		Rv1102c	0.78	-0.5
1,230,963	-				-0.0
1,230,963	-				+0.0
1,230,963	-				-0.6
1,230,963	-				+1.4
1,231,016	-		Rv1103c	0.14	-0.9
1,231,231	-		Rv1103c	0.81	-0.2
1,231,283	+				+0.1
1,231,287	+				+0.4
1,231,287	+				+0.4
1,231,287	+				-1.9
1,231,288	-				-2.6
1,231,288	-				+0.6
1,231,300	+				+0.1
1,231,301	-				+0.1
1,231,301	-				-0.3
1,231,301	-				-0.5
1,231,301	-				-0.3
1,231,301	-				-3.6
1,231,334	+				+0.2
1,231,392	-		Rv1104	0.13	-2.4
1,231,407	+		Rv1104	0.15	-0.4
1,231,408	-		Rv1104	0.16	+1.1
1,231,631	+		Rv1104	0.48	+0.4
1,231,631	+		Rv1104	0.48	+1.2
1,231,632	-		Rv1104	0.48	+0.3
1,231,661	+		Rv1104	0.52	+0.1
1,231,662	-		Rv1104	0.52	-0.4
1,231,662	-		Rv1104	0.52	-0.3
1,231,716	-		Rv1104	0.60	+1.1
1,231,825	-		Rv1104	0.76	-0.6