Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1025

Experiment: pH 5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRv1023 and Rv1024 are separated by 4 nucleotidesRv1024 and Rv1025 are separated by 16 nucleotidesRv1025 and Rv1026 overlap by 10 nucleotides Rv1023: Rv1023 - Probable enolase Eno, at 1,144,564 to 1,145,853 Rv1023 Rv1024: Rv1024 - Possible conserved membrane protein, at 1,145,858 to 1,146,544 Rv1024 Rv1025: Rv1025 - Conserved protein, at 1,146,561 to 1,147,028 Rv1025 Rv1026: Rv1026 - Conserved protein, at 1,147,019 to 1,147,978 Rv1026 Position (kb) 1146 1147 1148Strain fitness (log2 ratio) -1 0 1at 1145.855 kb on + strandat 1146.974 kb on - strand, within Rv1025at 1147.999 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pH 5.5
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1,145,855 + -0.9
1,146,974 - Rv1025 0.88 -1.0
1,147,999 - +0.3

Or see this region's nucleotide sequence