Experiment: pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0888 and Rv0889c are separated by 34 nucleotides
Rv0888: Rv0888 - Probable exported protein, at 987,233 to 988,705
Rv0888
Rv0889c: Rv0889c - Probable citrate synthase II CitA, at 988,740 to 989,861
Rv0889c
Position (kb) 987
988
989 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 986.901 kb on + strand at 987.173 kb on + strand at 987.173 kb on + strand at 987.174 kb on - strand at 987.174 kb on - strand at 987.240 kb on - strand at 987.304 kb on + strand at 987.453 kb on + strand, within Rv0888 at 987.453 kb on + strand, within Rv0888 at 987.454 kb on - strand, within Rv0888 at 987.920 kb on + strand, within Rv0888 at 987.921 kb on - strand, within Rv0888 at 987.921 kb on - strand, within Rv0888 at 988.011 kb on - strand, within Rv0888 at 988.011 kb on - strand, within Rv0888 at 988.014 kb on - strand, within Rv0888 at 988.014 kb on - strand, within Rv0888 at 988.014 kb on - strand, within Rv0888 at 988.044 kb on - strand, within Rv0888 at 988.102 kb on + strand, within Rv0888 at 988.117 kb on + strand, within Rv0888 at 988.193 kb on + strand, within Rv0888 at 988.193 kb on + strand, within Rv0888 at 988.193 kb on + strand, within Rv0888 at 988.193 kb on + strand, within Rv0888 at 988.194 kb on - strand, within Rv0888 at 988.194 kb on - strand, within Rv0888 at 988.194 kb on - strand, within Rv0888 at 988.194 kb on - strand, within Rv0888 at 988.194 kb on - strand, within Rv0888 at 988.239 kb on - strand, within Rv0888 at 988.280 kb on + strand, within Rv0888 at 988.287 kb on + strand, within Rv0888 at 988.287 kb on + strand, within Rv0888 at 988.288 kb on - strand, within Rv0888 at 988.288 kb on - strand, within Rv0888 at 988.291 kb on + strand, within Rv0888 at 988.291 kb on + strand, within Rv0888 at 988.292 kb on - strand, within Rv0888 at 988.292 kb on - strand, within Rv0888 at 988.292 kb on - strand, within Rv0888 at 988.292 kb on - strand, within Rv0888 at 988.346 kb on + strand, within Rv0888 at 988.346 kb on + strand, within Rv0888 at 988.347 kb on - strand, within Rv0888 at 988.347 kb on - strand, within Rv0888 at 988.347 kb on - strand, within Rv0888 at 988.477 kb on - strand, within Rv0888 at 988.676 kb on + strand at 988.699 kb on - strand at 988.807 kb on + strand at 988.807 kb on + strand at 988.808 kb on - strand at 988.808 kb on - strand at 989.104 kb on + strand, within Rv0889c at 989.470 kb on + strand, within Rv0889c at 989.470 kb on + strand, within Rv0889c at 989.498 kb on - strand, within Rv0889c
Per-strain Table
Position Strand Gene LocusTag Fraction pH 5.5 remove 986,901 + +0.3 987,173 + +1.1 987,173 + -0.3 987,174 - -0.7 987,174 - -0.7 987,240 - +0.9 987,304 + -0.4 987,453 + Rv0888 0.15 -2.4 987,453 + Rv0888 0.15 -0.4 987,454 - Rv0888 0.15 -1.0 987,920 + Rv0888 0.47 -0.6 987,921 - Rv0888 0.47 -0.3 987,921 - Rv0888 0.47 -1.2 988,011 - Rv0888 0.53 -2.9 988,011 - Rv0888 0.53 -0.6 988,014 - Rv0888 0.53 -1.4 988,014 - Rv0888 0.53 -0.1 988,014 - Rv0888 0.53 -0.6 988,044 - Rv0888 0.55 -0.4 988,102 + Rv0888 0.59 -0.8 988,117 + Rv0888 0.60 +0.0 988,193 + Rv0888 0.65 -0.4 988,193 + Rv0888 0.65 -0.3 988,193 + Rv0888 0.65 -0.5 988,193 + Rv0888 0.65 -0.4 988,194 - Rv0888 0.65 -0.8 988,194 - Rv0888 0.65 -0.1 988,194 - Rv0888 0.65 -1.5 988,194 - Rv0888 0.65 -0.2 988,194 - Rv0888 0.65 +1.9 988,239 - Rv0888 0.68 +0.0 988,280 + Rv0888 0.71 -0.3 988,287 + Rv0888 0.72 +1.1 988,287 + Rv0888 0.72 -0.9 988,288 - Rv0888 0.72 -0.4 988,288 - Rv0888 0.72 +0.6 988,291 + Rv0888 0.72 -0.6 988,291 + Rv0888 0.72 +0.1 988,292 - Rv0888 0.72 -0.4 988,292 - Rv0888 0.72 -1.7 988,292 - Rv0888 0.72 -1.4 988,292 - Rv0888 0.72 -1.6 988,346 + Rv0888 0.76 +0.3 988,346 + Rv0888 0.76 -1.1 988,347 - Rv0888 0.76 -0.1 988,347 - Rv0888 0.76 +0.2 988,347 - Rv0888 0.76 +0.2 988,477 - Rv0888 0.84 -1.9 988,676 + -1.1 988,699 - -0.0 988,807 + +0.2 988,807 + -0.5 988,808 - +0.1 988,808 - -1.7 989,104 + Rv0889c 0.32 -0.5 989,470 + Rv0889c 0.65 -0.4 989,470 + Rv0889c 0.65 -0.4 989,498 - Rv0889c 0.68 -0.0
Or see this region's nucleotide sequence