Experiment: pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0777 and Rv0778 are separated by 4 nucleotides Rv0778 and Rv0779c overlap by 4 nucleotides Rv0779c and Rv0780 are separated by 50 nucleotides
Rv0777: Rv0777 - Probable adenylosuccinate lyase PurB (adenylosuccinase) (ASL) (ASASE), at 870,008 to 871,426
Rv0777
Rv0778: Rv0778 - Possible cytochrome P450 126 Cyp126, at 871,431 to 872,675
Rv0778
Rv0779c: Rv0779c - Possible conserved transmembrane protein, at 872,672 to 873,292
Rv0779c
Rv0780: Rv0780 - Phosphoribosylaminoimidazole-succinocarboxamide synthase PurC (SAICAR synthetase), at 873,343 to 874,236
Rv0780
Position (kb) 871
872
873 Strain fitness (log2 ratio) -1
0
1 at 871.436 kb on + strand at 871.540 kb on - strand at 871.638 kb on + strand, within Rv0778 at 871.639 kb on - strand, within Rv0778 at 871.840 kb on + strand, within Rv0778 at 871.840 kb on + strand, within Rv0778 at 872.037 kb on + strand, within Rv0778 at 872.038 kb on - strand, within Rv0778 at 872.043 kb on + strand, within Rv0778 at 872.043 kb on + strand, within Rv0778 at 872.044 kb on - strand, within Rv0778 at 872.067 kb on - strand, within Rv0778 at 872.160 kb on + strand, within Rv0778 at 872.160 kb on + strand, within Rv0778 at 872.161 kb on - strand, within Rv0778 at 872.621 kb on + strand at 872.674 kb on - strand at 873.301 kb on + strand at 873.302 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction pH 5.5 remove 871,436 + +0.0 871,540 - -1.1 871,638 + Rv0778 0.17 -0.0 871,639 - Rv0778 0.17 -0.3 871,840 + Rv0778 0.33 +0.6 871,840 + Rv0778 0.33 -0.5 872,037 + Rv0778 0.49 +0.1 872,038 - Rv0778 0.49 -0.3 872,043 + Rv0778 0.49 +0.0 872,043 + Rv0778 0.49 +0.2 872,044 - Rv0778 0.49 +0.8 872,067 - Rv0778 0.51 +0.5 872,160 + Rv0778 0.59 -0.6 872,160 + Rv0778 0.59 +0.6 872,161 - Rv0778 0.59 -0.2 872,621 + +0.1 872,674 - -0.8 873,301 + -0.4 873,302 - +0.2
Or see this region's nucleotide sequence