Experiment: pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0496 and Rv0497 overlap by 4 nucleotides Rv0497 and Rv0498 are separated by 15 nucleotides Rv0498 and Rv0499 are separated by 15 nucleotides
Rv0496: Rv0496 - Conserved hypothetical protein, at 586,394 to 587,380
Rv0496
Rv0497: Rv0497 - Probable conserved transmembrane protein, at 587,377 to 588,309
Rv0497
Rv0498: Rv0498 - Conserved hypothetical protein, at 588,325 to 589,167
Rv0498
Rv0499: Rv0499 - Conserved hypothetical protein, at 589,183 to 590,058
Rv0499
Position (kb) 587
588
589 Strain fitness (log2 ratio) -2
-1
0
1 at 587.001 kb on + strand, within Rv0496 at 587.049 kb on + strand, within Rv0496 at 587.084 kb on - strand, within Rv0496 at 587.084 kb on - strand, within Rv0496 at 587.090 kb on - strand, within Rv0496 at 587.199 kb on + strand, within Rv0496 at 587.200 kb on - strand, within Rv0496 at 588.155 kb on + strand, within Rv0497 at 588.155 kb on + strand, within Rv0497 at 588.164 kb on + strand, within Rv0497 at 588.170 kb on + strand, within Rv0497 at 588.689 kb on + strand, within Rv0498 at 588.690 kb on - strand, within Rv0498 at 588.690 kb on - strand, within Rv0498 at 588.786 kb on + strand, within Rv0498 at 588.786 kb on + strand, within Rv0498 at 588.787 kb on - strand, within Rv0498 at 588.787 kb on - strand, within Rv0498 at 588.835 kb on + strand, within Rv0498 at 588.835 kb on + strand, within Rv0498 at 588.836 kb on - strand, within Rv0498 at 588.866 kb on - strand, within Rv0498 at 588.866 kb on - strand, within Rv0498 at 589.169 kb on - strand at 589.182 kb on + strand at 589.182 kb on + strand at 589.183 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction pH 5.5 remove 587,001 + Rv0496 0.61 -1.4 587,049 + Rv0496 0.66 -0.3 587,084 - Rv0496 0.70 -0.1 587,084 - Rv0496 0.70 -0.1 587,090 - Rv0496 0.71 -0.6 587,199 + Rv0496 0.82 -0.3 587,200 - Rv0496 0.82 +0.4 588,155 + Rv0497 0.83 -1.1 588,155 + Rv0497 0.83 +0.2 588,164 + Rv0497 0.84 -0.9 588,170 + Rv0497 0.85 -1.1 588,689 + Rv0498 0.43 +0.2 588,690 - Rv0498 0.43 +1.1 588,690 - Rv0498 0.43 -2.1 588,786 + Rv0498 0.55 +0.5 588,786 + Rv0498 0.55 +0.7 588,787 - Rv0498 0.55 +1.0 588,787 - Rv0498 0.55 +0.3 588,835 + Rv0498 0.60 +0.0 588,835 + Rv0498 0.60 -0.4 588,836 - Rv0498 0.61 -0.1 588,866 - Rv0498 0.64 +0.5 588,866 - Rv0498 0.64 +1.0 589,169 - -1.9 589,182 + +0.8 589,182 + -0.2 589,183 - +0.1
Or see this region's nucleotide sequence