Experiment: pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0246 and Rv0247c overlap by 4 nucleotides Rv0247c and Rv0248c are separated by 0 nucleotides
Rv0246: Rv0246 - Probable conserved integral membrane protein, at 296,809 to 298,119
Rv0246
Rv0247c: Rv0247c - Probable succinate dehydrogenase [iron-sulfur subunit] (succinic dehydrogenase), at 298,116 to 298,862
Rv0247c
Rv0248c: Rv0248c - Probable succinate dehydrogenase [iron-sulfur subunit] (succinic dehydrogenase), at 298,863 to 300,803
Rv0248c
Position (kb) 298
299 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 297.155 kb on + strand, within Rv0246 at 297.155 kb on + strand, within Rv0246 at 297.231 kb on + strand, within Rv0246 at 297.268 kb on - strand, within Rv0246 at 297.268 kb on - strand, within Rv0246 at 297.362 kb on + strand, within Rv0246 at 297.362 kb on + strand, within Rv0246 at 297.362 kb on + strand, within Rv0246 at 297.363 kb on - strand, within Rv0246 at 297.363 kb on - strand, within Rv0246 at 297.390 kb on + strand, within Rv0246 at 297.391 kb on - strand, within Rv0246 at 297.404 kb on + strand, within Rv0246 at 297.473 kb on - strand, within Rv0246 at 297.473 kb on - strand, within Rv0246 at 297.473 kb on - strand, within Rv0246 at 297.517 kb on + strand, within Rv0246 at 297.534 kb on - strand, within Rv0246 at 297.534 kb on - strand, within Rv0246 at 297.746 kb on + strand, within Rv0246 at 297.747 kb on - strand, within Rv0246 at 297.815 kb on + strand, within Rv0246 at 298.105 kb on - strand at 298.146 kb on + strand at 298.253 kb on + strand, within Rv0247c at 299.230 kb on - strand, within Rv0248c at 299.240 kb on - strand, within Rv0248c at 299.327 kb on - strand, within Rv0248c at 299.327 kb on - strand, within Rv0248c at 299.464 kb on - strand, within Rv0248c at 299.467 kb on + strand, within Rv0248c at 299.638 kb on + strand, within Rv0248c
Per-strain Table
Position Strand Gene LocusTag Fraction pH 5.5 remove 297,155 + Rv0246 0.26 -0.9 297,155 + Rv0246 0.26 +1.7 297,231 + Rv0246 0.32 +1.7 297,268 - Rv0246 0.35 -0.7 297,268 - Rv0246 0.35 +0.1 297,362 + Rv0246 0.42 -0.8 297,362 + Rv0246 0.42 -0.5 297,362 + Rv0246 0.42 -0.1 297,363 - Rv0246 0.42 -0.8 297,363 - Rv0246 0.42 -1.1 297,390 + Rv0246 0.44 +0.3 297,391 - Rv0246 0.44 +0.0 297,404 + Rv0246 0.45 +2.4 297,473 - Rv0246 0.51 +1.7 297,473 - Rv0246 0.51 -0.2 297,473 - Rv0246 0.51 -0.2 297,517 + Rv0246 0.54 +1.5 297,534 - Rv0246 0.55 -0.2 297,534 - Rv0246 0.55 +1.7 297,746 + Rv0246 0.71 -1.8 297,747 - Rv0246 0.72 +0.3 297,815 + Rv0246 0.77 -0.2 298,105 - -0.1 298,146 + -0.5 298,253 + Rv0247c 0.18 -3.4 299,230 - Rv0248c 0.19 -1.3 299,240 - Rv0248c 0.19 +0.0 299,327 - Rv0248c 0.24 -0.5 299,327 - Rv0248c 0.24 -0.4 299,464 - Rv0248c 0.31 -0.2 299,467 + Rv0248c 0.31 -0.1 299,638 + Rv0248c 0.40 -0.5
Or see this region's nucleotide sequence