Experiment: pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0087 and Rv0088 are separated by 34 nucleotides Rv0088 and Rv0089 are separated by 156 nucleotides Rv0089 and Rv0090 are separated by 128 nucleotides
Rv0087: Rv0087 - Possible formate hydrogenase HycE (FHL), at 95,414 to 96,892
Rv0087
Rv0088: Rv0088 - Possible polyketide cyclase/dehydrase, at 96,927 to 97,601
Rv0088
Rv0089: Rv0089 - Possible methyltransferase/methylase, at 97,758 to 98,351
Rv0089
Rv0090: Rv0090 - Possible membrane protein, at 98,480 to 99,250
Rv0090
Position (kb) 96
97
98 Strain fitness (log2 ratio) -1
0
1 at 96.513 kb on + strand, within Rv0087 at 96.974 kb on + strand at 96.981 kb on - strand at 96.981 kb on - strand at 97.399 kb on + strand, within Rv0088 at 97.581 kb on + strand at 97.668 kb on + strand at 97.707 kb on + strand at 97.707 kb on + strand at 97.888 kb on + strand, within Rv0089 at 97.893 kb on + strand, within Rv0089 at 98.261 kb on - strand, within Rv0089 at 98.397 kb on - strand at 98.437 kb on + strand at 98.468 kb on + strand at 98.468 kb on + strand at 98.469 kb on - strand at 98.469 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction pH 5.5 remove 96,513 + Rv0087 0.74 +0.1 96,974 + +1.7 96,981 - -0.5 96,981 - -0.3 97,399 + Rv0088 0.70 -0.9 97,581 + +0.6 97,668 + -0.6 97,707 + -0.3 97,707 + +0.9 97,888 + Rv0089 0.22 -0.2 97,893 + Rv0089 0.23 -0.3 98,261 - Rv0089 0.85 -0.2 98,397 - -0.9 98,437 + -0.7 98,468 + +0.2 98,468 + -0.3 98,469 - +0.1 98,469 - -0.9
Or see this region's nucleotide sequence