Experiment: pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0017c and Rv0018c overlap by 4 nucleotides Rv0018c and Rv0019c are separated by 88 nucleotides Rv0019c and Rv0020c are separated by 123 nucleotides
Rv0017c: Rv0017c - Probable cell division protein RodA, at 20,231 to 21,640
Rv0017c
Rv0018c: Rv0018c - Phosphoserine/threonine phosphatase PstP, at 21,637 to 23,181
Rv0018c
Rv0019c: Rv0019c - Conserved protein with FHA domain, FhaB, at 23,270 to 23,737
Rv0019c
Rv0020c: Rv0020c - Conserved protein with FHA domain, FhaA, at 23,861 to 25,444
Rv0020c
Position (kb) 21
22
23
24 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 20.883 kb on + strand, within Rv0017c at 20.884 kb on - strand, within Rv0017c at 21.415 kb on - strand, within Rv0017c at 22.118 kb on + strand, within Rv0018c at 22.119 kb on - strand, within Rv0018c at 22.187 kb on + strand, within Rv0018c at 22.455 kb on - strand, within Rv0018c at 23.382 kb on - strand, within Rv0019c at 23.382 kb on - strand, within Rv0019c at 23.443 kb on - strand, within Rv0019c at 23.443 kb on - strand, within Rv0019c at 23.513 kb on - strand, within Rv0019c at 23.641 kb on - strand, within Rv0019c at 23.856 kb on + strand at 23.857 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction pH 5.5 remove 20,883 + Rv0017c 0.46 -0.3 20,884 - Rv0017c 0.46 +0.1 21,415 - Rv0017c 0.84 -1.2 22,118 + Rv0018c 0.31 -1.0 22,119 - Rv0018c 0.31 +0.2 22,187 + Rv0018c 0.36 +3.3 22,455 - Rv0018c 0.53 -1.7 23,382 - Rv0019c 0.24 +1.7 23,382 - Rv0019c 0.24 -0.4 23,443 - Rv0019c 0.37 -1.3 23,443 - Rv0019c 0.37 +0.1 23,513 - Rv0019c 0.52 -1.4 23,641 - Rv0019c 0.79 -1.2 23,856 + -2.1 23,857 - -0.3
Or see this region's nucleotide sequence