Experiment: R2A with 1-octen-3-ol 1.3568235 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS19140 and ABIE51_RS19145 are separated by 97 nucleotides ABIE51_RS19145 and ABIE51_RS19150 are separated by 99 nucleotides
ABIE51_RS19140: ABIE51_RS19140 - DNA primase, at 4,173,057 to 4,174,829
_RS19140
ABIE51_RS19145: ABIE51_RS19145 - hypothetical protein, at 4,174,927 to 4,175,436
_RS19145
ABIE51_RS19150: ABIE51_RS19150 - prolyl oligopeptidase family serine peptidase, at 4,175,536 to 4,177,506
_RS19150
Position (kb) 4174
4175
4176 Strain fitness (log2 ratio) -1
0
1
2 at 4174.955 kb on + strand at 4174.978 kb on + strand, within ABIE51_RS19145 at 4174.979 kb on - strand, within ABIE51_RS19145 at 4174.979 kb on - strand, within ABIE51_RS19145 at 4175.213 kb on + strand, within ABIE51_RS19145 at 4175.213 kb on + strand, within ABIE51_RS19145 at 4175.214 kb on - strand, within ABIE51_RS19145 at 4175.214 kb on - strand, within ABIE51_RS19145 at 4175.281 kb on + strand, within ABIE51_RS19145 at 4175.282 kb on - strand, within ABIE51_RS19145 at 4175.282 kb on - strand, within ABIE51_RS19145 at 4175.487 kb on + strand at 4175.689 kb on + strand at 4175.936 kb on + strand, within ABIE51_RS19150 at 4175.936 kb on + strand, within ABIE51_RS19150 at 4175.936 kb on + strand, within ABIE51_RS19150 at 4175.936 kb on + strand, within ABIE51_RS19150 at 4175.936 kb on + strand, within ABIE51_RS19150 at 4175.936 kb on + strand, within ABIE51_RS19150 at 4175.936 kb on + strand, within ABIE51_RS19150 at 4175.937 kb on - strand, within ABIE51_RS19150 at 4175.937 kb on - strand, within ABIE51_RS19150 at 4175.937 kb on - strand, within ABIE51_RS19150 at 4175.937 kb on - strand, within ABIE51_RS19150 at 4175.937 kb on - strand, within ABIE51_RS19150 at 4175.937 kb on - strand, within ABIE51_RS19150 at 4175.937 kb on - strand, within ABIE51_RS19150 at 4176.169 kb on + strand, within ABIE51_RS19150 at 4176.169 kb on + strand, within ABIE51_RS19150 at 4176.169 kb on + strand, within ABIE51_RS19150 at 4176.169 kb on + strand, within ABIE51_RS19150 at 4176.169 kb on + strand, within ABIE51_RS19150 at 4176.170 kb on - strand, within ABIE51_RS19150 at 4176.170 kb on - strand, within ABIE51_RS19150 at 4176.274 kb on + strand, within ABIE51_RS19150 at 4176.275 kb on - strand, within ABIE51_RS19150 at 4176.298 kb on + strand, within ABIE51_RS19150 at 4176.298 kb on + strand, within ABIE51_RS19150 at 4176.299 kb on - strand, within ABIE51_RS19150 at 4176.301 kb on + strand, within ABIE51_RS19150 at 4176.301 kb on + strand, within ABIE51_RS19150 at 4176.301 kb on + strand, within ABIE51_RS19150 at 4176.301 kb on + strand, within ABIE51_RS19150 at 4176.301 kb on + strand, within ABIE51_RS19150 at 4176.301 kb on + strand, within ABIE51_RS19150 at 4176.301 kb on + strand, within ABIE51_RS19150 at 4176.301 kb on + strand, within ABIE51_RS19150 at 4176.301 kb on + strand, within ABIE51_RS19150 at 4176.302 kb on - strand, within ABIE51_RS19150 at 4176.302 kb on - strand, within ABIE51_RS19150 at 4176.302 kb on - strand, within ABIE51_RS19150 at 4176.302 kb on - strand, within ABIE51_RS19150 at 4176.302 kb on - strand, within ABIE51_RS19150 at 4176.302 kb on - strand, within ABIE51_RS19150 at 4176.302 kb on - strand, within ABIE51_RS19150
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 1.3568235 mM remove 4,174,955 + -0.4 4,174,978 + ABIE51_RS19145 0.10 +0.4 4,174,979 - ABIE51_RS19145 0.10 +0.4 4,174,979 - ABIE51_RS19145 0.10 +0.4 4,175,213 + ABIE51_RS19145 0.56 +0.2 4,175,213 + ABIE51_RS19145 0.56 -0.4 4,175,214 - ABIE51_RS19145 0.56 +0.0 4,175,214 - ABIE51_RS19145 0.56 +0.3 4,175,281 + ABIE51_RS19145 0.69 +0.2 4,175,282 - ABIE51_RS19145 0.70 -0.6 4,175,282 - ABIE51_RS19145 0.70 -0.1 4,175,487 + +0.5 4,175,689 + +0.4 4,175,936 + ABIE51_RS19150 0.20 +0.8 4,175,936 + ABIE51_RS19150 0.20 -0.1 4,175,936 + ABIE51_RS19150 0.20 +2.3 4,175,936 + ABIE51_RS19150 0.20 -0.1 4,175,936 + ABIE51_RS19150 0.20 +2.3 4,175,936 + ABIE51_RS19150 0.20 +0.5 4,175,936 + ABIE51_RS19150 0.20 +0.1 4,175,937 - ABIE51_RS19150 0.20 -0.2 4,175,937 - ABIE51_RS19150 0.20 -0.3 4,175,937 - ABIE51_RS19150 0.20 +0.1 4,175,937 - ABIE51_RS19150 0.20 -0.4 4,175,937 - ABIE51_RS19150 0.20 -1.6 4,175,937 - ABIE51_RS19150 0.20 -0.0 4,175,937 - ABIE51_RS19150 0.20 +0.3 4,176,169 + ABIE51_RS19150 0.32 +0.0 4,176,169 + ABIE51_RS19150 0.32 +0.7 4,176,169 + ABIE51_RS19150 0.32 +0.3 4,176,169 + ABIE51_RS19150 0.32 -0.6 4,176,169 + ABIE51_RS19150 0.32 +0.5 4,176,170 - ABIE51_RS19150 0.32 +0.1 4,176,170 - ABIE51_RS19150 0.32 -0.3 4,176,274 + ABIE51_RS19150 0.37 -0.1 4,176,275 - ABIE51_RS19150 0.37 -1.1 4,176,298 + ABIE51_RS19150 0.39 -0.2 4,176,298 + ABIE51_RS19150 0.39 +0.2 4,176,299 - ABIE51_RS19150 0.39 +0.1 4,176,301 + ABIE51_RS19150 0.39 -0.3 4,176,301 + ABIE51_RS19150 0.39 -0.0 4,176,301 + ABIE51_RS19150 0.39 -0.9 4,176,301 + ABIE51_RS19150 0.39 -0.8 4,176,301 + ABIE51_RS19150 0.39 +0.6 4,176,301 + ABIE51_RS19150 0.39 -0.5 4,176,301 + ABIE51_RS19150 0.39 -0.1 4,176,301 + ABIE51_RS19150 0.39 +0.5 4,176,301 + ABIE51_RS19150 0.39 +1.0 4,176,302 - ABIE51_RS19150 0.39 -0.3 4,176,302 - ABIE51_RS19150 0.39 +1.5 4,176,302 - ABIE51_RS19150 0.39 -0.1 4,176,302 - ABIE51_RS19150 0.39 -0.6 4,176,302 - ABIE51_RS19150 0.39 -0.9 4,176,302 - ABIE51_RS19150 0.39 +1.2 4,176,302 - ABIE51_RS19150 0.39 -1.5
Or see this region's nucleotide sequence