Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS16660

Experiment: R2A with 1-octen-3-ol 1.3568235 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS16650 and ABIE51_RS16655 are separated by 10 nucleotidesABIE51_RS16655 and ABIE51_RS16660 are separated by 88 nucleotidesABIE51_RS16660 and ABIE51_RS16665 are separated by 348 nucleotides ABIE51_RS16650: ABIE51_RS16650 - flagellar protein FlgN, at 3,622,963 to 3,623,295 _RS16650 ABIE51_RS16655: ABIE51_RS16655 - flagellar biosynthesis anti-sigma factor FlgM, at 3,623,306 to 3,623,623 _RS16655 ABIE51_RS16660: ABIE51_RS16660 - flagellar basal body P-ring formation chaperone FlgA, at 3,623,712 to 3,624,380 _RS16660 ABIE51_RS16665: ABIE51_RS16665 - chemotaxis protein, at 3,624,729 to 3,625,655 _RS16665 Position (kb) 3623 3624 3625Strain fitness (log2 ratio) -1 0 1at 3623.021 kb on + strand, within ABIE51_RS16650at 3623.021 kb on + strand, within ABIE51_RS16650at 3623.022 kb on - strand, within ABIE51_RS16650at 3623.703 kb on + strandat 3623.703 kb on + strandat 3623.762 kb on + strandat 3624.118 kb on + strand, within ABIE51_RS16660at 3624.118 kb on + strand, within ABIE51_RS16660at 3624.118 kb on + strand, within ABIE51_RS16660at 3624.118 kb on + strand, within ABIE51_RS16660at 3624.118 kb on + strand, within ABIE51_RS16660at 3624.118 kb on + strand, within ABIE51_RS16660at 3624.118 kb on + strand, within ABIE51_RS16660at 3624.118 kb on + strand, within ABIE51_RS16660at 3624.118 kb on + strand, within ABIE51_RS16660at 3624.119 kb on - strand, within ABIE51_RS16660at 3624.119 kb on - strand, within ABIE51_RS16660at 3624.119 kb on - strand, within ABIE51_RS16660at 3624.696 kb on - strandat 3625.002 kb on + strand, within ABIE51_RS16665at 3625.002 kb on + strand, within ABIE51_RS16665at 3625.003 kb on - strand, within ABIE51_RS16665at 3625.126 kb on - strand, within ABIE51_RS16665at 3625.126 kb on - strand, within ABIE51_RS16665

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 1.3568235 mM
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3,623,021 + ABIE51_RS16650 0.17 +0.2
3,623,021 + ABIE51_RS16650 0.17 -0.0
3,623,022 - ABIE51_RS16650 0.18 +0.4
3,623,703 + -0.2
3,623,703 + -0.3
3,623,762 + +0.4
3,624,118 + ABIE51_RS16660 0.61 +0.5
3,624,118 + ABIE51_RS16660 0.61 +0.3
3,624,118 + ABIE51_RS16660 0.61 +0.3
3,624,118 + ABIE51_RS16660 0.61 +0.8
3,624,118 + ABIE51_RS16660 0.61 +0.3
3,624,118 + ABIE51_RS16660 0.61 +0.2
3,624,118 + ABIE51_RS16660 0.61 -0.8
3,624,118 + ABIE51_RS16660 0.61 +0.7
3,624,118 + ABIE51_RS16660 0.61 +1.0
3,624,119 - ABIE51_RS16660 0.61 +0.3
3,624,119 - ABIE51_RS16660 0.61 +0.8
3,624,119 - ABIE51_RS16660 0.61 +0.7
3,624,696 - +0.7
3,625,002 + ABIE51_RS16665 0.29 +0.3
3,625,002 + ABIE51_RS16665 0.29 +0.2
3,625,003 - ABIE51_RS16665 0.30 -0.5
3,625,126 - ABIE51_RS16665 0.43 -1.7
3,625,126 - ABIE51_RS16665 0.43 -0.4

Or see this region's nucleotide sequence