Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS13715

Experiment: R2A with 1-octen-3-ol 1.3568235 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS13710 and ABIE51_RS13715 are separated by 137 nucleotidesABIE51_RS13715 and ABIE51_RS13720 are separated by 23 nucleotides ABIE51_RS13710: ABIE51_RS13710 - dicarboxylate/amino acid:cation symporter, at 2,972,532 to 2,973,791 _RS13710 ABIE51_RS13715: ABIE51_RS13715 - tRNA-Arg, at 2,973,929 to 2,974,005 _RS13715 ABIE51_RS13720: ABIE51_RS13720 - aldehyde dehydrogenase family protein, at 2,974,029 to 2,975,561 _RS13720 Position (kb) 2973 2974 2975Strain fitness (log2 ratio) -2 -1 0 1at 2973.205 kb on - strand, within ABIE51_RS13710at 2973.228 kb on + strand, within ABIE51_RS13710at 2973.229 kb on - strand, within ABIE51_RS13710at 2973.229 kb on - strand, within ABIE51_RS13710at 2973.229 kb on - strand, within ABIE51_RS13710at 2973.252 kb on + strand, within ABIE51_RS13710at 2973.252 kb on + strand, within ABIE51_RS13710at 2973.252 kb on + strand, within ABIE51_RS13710at 2973.252 kb on + strand, within ABIE51_RS13710at 2973.253 kb on - strand, within ABIE51_RS13710at 2973.253 kb on - strand, within ABIE51_RS13710at 2973.253 kb on - strand, within ABIE51_RS13710at 2973.469 kb on - strand, within ABIE51_RS13710at 2973.469 kb on - strand, within ABIE51_RS13710at 2973.469 kb on - strand, within ABIE51_RS13710at 2973.501 kb on + strand, within ABIE51_RS13710at 2973.501 kb on + strand, within ABIE51_RS13710at 2973.553 kb on + strand, within ABIE51_RS13710at 2973.553 kb on + strand, within ABIE51_RS13710at 2973.553 kb on + strand, within ABIE51_RS13710at 2973.554 kb on - strand, within ABIE51_RS13710at 2973.554 kb on - strand, within ABIE51_RS13710at 2973.554 kb on - strand, within ABIE51_RS13710at 2974.083 kb on + strandat 2974.194 kb on + strand, within ABIE51_RS13720at 2974.194 kb on + strand, within ABIE51_RS13720at 2974.425 kb on + strand, within ABIE51_RS13720at 2974.467 kb on + strand, within ABIE51_RS13720at 2974.467 kb on + strand, within ABIE51_RS13720at 2974.467 kb on + strand, within ABIE51_RS13720at 2974.467 kb on + strand, within ABIE51_RS13720at 2974.571 kb on + strand, within ABIE51_RS13720at 2974.992 kb on + strand, within ABIE51_RS13720at 2974.992 kb on + strand, within ABIE51_RS13720

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 1.3568235 mM
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2,973,205 - ABIE51_RS13710 0.53 -0.2
2,973,228 + ABIE51_RS13710 0.55 +0.2
2,973,229 - ABIE51_RS13710 0.55 -0.3
2,973,229 - ABIE51_RS13710 0.55 -0.1
2,973,229 - ABIE51_RS13710 0.55 -0.4
2,973,252 + ABIE51_RS13710 0.57 +0.0
2,973,252 + ABIE51_RS13710 0.57 +0.6
2,973,252 + ABIE51_RS13710 0.57 +0.7
2,973,252 + ABIE51_RS13710 0.57 +1.2
2,973,253 - ABIE51_RS13710 0.57 +0.5
2,973,253 - ABIE51_RS13710 0.57 -1.2
2,973,253 - ABIE51_RS13710 0.57 +0.2
2,973,469 - ABIE51_RS13710 0.74 -0.8
2,973,469 - ABIE51_RS13710 0.74 -0.3
2,973,469 - ABIE51_RS13710 0.74 -0.1
2,973,501 + ABIE51_RS13710 0.77 +0.3
2,973,501 + ABIE51_RS13710 0.77 +0.3
2,973,553 + ABIE51_RS13710 0.81 -0.0
2,973,553 + ABIE51_RS13710 0.81 -0.5
2,973,553 + ABIE51_RS13710 0.81 +0.6
2,973,554 - ABIE51_RS13710 0.81 +0.3
2,973,554 - ABIE51_RS13710 0.81 -0.8
2,973,554 - ABIE51_RS13710 0.81 -0.8
2,974,083 + -1.2
2,974,194 + ABIE51_RS13720 0.11 -0.4
2,974,194 + ABIE51_RS13720 0.11 -0.4
2,974,425 + ABIE51_RS13720 0.26 -1.4
2,974,467 + ABIE51_RS13720 0.29 -2.2
2,974,467 + ABIE51_RS13720 0.29 -1.8
2,974,467 + ABIE51_RS13720 0.29 -1.4
2,974,467 + ABIE51_RS13720 0.29 -1.2
2,974,571 + ABIE51_RS13720 0.35 -0.7
2,974,992 + ABIE51_RS13720 0.63 -0.4
2,974,992 + ABIE51_RS13720 0.63 -0.2

Or see this region's nucleotide sequence