Experiment: R2A with 1-octen-3-ol 1.3568235 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS08760 and ABIE51_RS08765 are separated by 69 nucleotides ABIE51_RS08765 and ABIE51_RS08770 are separated by 90 nucleotides ABIE51_RS08770 and ABIE51_RS08775 are separated by 514 nucleotides
ABIE51_RS08760: ABIE51_RS08760 - fimbria/pilus outer membrane usher protein, at 1,857,297 to 1,859,747
_RS08760
ABIE51_RS08765: ABIE51_RS08765 - fimbria/pilus periplasmic chaperone, at 1,859,817 to 1,860,533
_RS08765
ABIE51_RS08770: ABIE51_RS08770 - spore coat U domain-containing protein, at 1,860,624 to 1,861,130
_RS08770
ABIE51_RS08775: ABIE51_RS08775 - pseudouridine synthase, at 1,861,645 to 1,863,324
_RS08775
Position (kb)
1860
1861
1862 Strain fitness (log2 ratio)
-1
0
1 at 1859.632 kb on + strand at 1859.635 kb on + strand at 1859.688 kb on + strand at 1859.688 kb on + strand at 1859.938 kb on + strand, within ABIE51_RS08765 at 1860.131 kb on - strand, within ABIE51_RS08765 at 1860.202 kb on + strand, within ABIE51_RS08765 at 1860.203 kb on - strand, within ABIE51_RS08765 at 1860.628 kb on + strand at 1860.628 kb on + strand at 1860.629 kb on - strand at 1860.629 kb on - strand at 1860.629 kb on - strand at 1860.892 kb on + strand, within ABIE51_RS08770 at 1860.893 kb on - strand, within ABIE51_RS08770 at 1860.893 kb on - strand, within ABIE51_RS08770 at 1861.124 kb on + strand at 1861.124 kb on + strand at 1861.125 kb on - strand at 1861.125 kb on - strand at 1861.181 kb on + strand at 1861.257 kb on + strand at 1861.257 kb on + strand at 1861.257 kb on + strand at 1861.430 kb on + strand at 1861.430 kb on + strand at 1861.430 kb on + strand at 1861.430 kb on + strand at 1861.431 kb on - strand at 1861.525 kb on + strand at 1861.525 kb on + strand at 1861.525 kb on + strand at 1861.526 kb on - strand at 1861.526 kb on - strand at 1861.526 kb on - strand at 1861.526 kb on - strand at 1861.526 kb on - strand at 1861.572 kb on + strand at 1861.572 kb on + strand at 1861.572 kb on + strand at 1861.572 kb on + strand at 1861.573 kb on - strand at 1861.573 kb on - strand at 1861.573 kb on - strand at 1861.829 kb on + strand, within ABIE51_RS08775 at 1861.895 kb on + strand, within ABIE51_RS08775
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 1.3568235 mM remove 1,859,632 + -0.1 1,859,635 + -0.1 1,859,688 + -0.1 1,859,688 + +0.3 1,859,938 + ABIE51_RS08765 0.17 +0.5 1,860,131 - ABIE51_RS08765 0.44 +0.6 1,860,202 + ABIE51_RS08765 0.54 -0.6 1,860,203 - ABIE51_RS08765 0.54 -0.0 1,860,628 + +0.2 1,860,628 + -0.2 1,860,629 - +0.3 1,860,629 - -0.5 1,860,629 - +0.3 1,860,892 + ABIE51_RS08770 0.53 +0.1 1,860,893 - ABIE51_RS08770 0.53 -0.3 1,860,893 - ABIE51_RS08770 0.53 -0.6 1,861,124 + -0.3 1,861,124 + -0.9 1,861,125 - -0.1 1,861,125 - +0.9 1,861,181 + -0.5 1,861,257 + -0.3 1,861,257 + +0.5 1,861,257 + -0.6 1,861,430 + -0.2 1,861,430 + -0.4 1,861,430 + -0.1 1,861,430 + +1.6 1,861,431 - +0.1 1,861,525 + +0.0 1,861,525 + -0.1 1,861,525 + +0.5 1,861,526 - +1.1 1,861,526 - -0.5 1,861,526 - +1.1 1,861,526 - +0.0 1,861,526 - -0.2 1,861,572 + +0.3 1,861,572 + +0.6 1,861,572 + -0.6 1,861,572 + -0.4 1,861,573 - -0.0 1,861,573 - +1.4 1,861,573 - +0.3 1,861,829 + ABIE51_RS08775 0.11 +1.2 1,861,895 + ABIE51_RS08775 0.15 +0.9
Or see this region's nucleotide sequence