Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS08770

Experiment: R2A with 1-octen-3-ol 1.3568235 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS08760 and ABIE51_RS08765 are separated by 69 nucleotidesABIE51_RS08765 and ABIE51_RS08770 are separated by 90 nucleotidesABIE51_RS08770 and ABIE51_RS08775 are separated by 514 nucleotides ABIE51_RS08760: ABIE51_RS08760 - fimbria/pilus outer membrane usher protein, at 1,857,297 to 1,859,747 _RS08760 ABIE51_RS08765: ABIE51_RS08765 - fimbria/pilus periplasmic chaperone, at 1,859,817 to 1,860,533 _RS08765 ABIE51_RS08770: ABIE51_RS08770 - spore coat U domain-containing protein, at 1,860,624 to 1,861,130 _RS08770 ABIE51_RS08775: ABIE51_RS08775 - pseudouridine synthase, at 1,861,645 to 1,863,324 _RS08775 Position (kb) 1860 1861 1862Strain fitness (log2 ratio) -1 0 1at 1859.632 kb on + strandat 1859.635 kb on + strandat 1859.688 kb on + strandat 1859.688 kb on + strandat 1859.938 kb on + strand, within ABIE51_RS08765at 1860.131 kb on - strand, within ABIE51_RS08765at 1860.202 kb on + strand, within ABIE51_RS08765at 1860.203 kb on - strand, within ABIE51_RS08765at 1860.628 kb on + strandat 1860.628 kb on + strandat 1860.629 kb on - strandat 1860.629 kb on - strandat 1860.629 kb on - strandat 1860.892 kb on + strand, within ABIE51_RS08770at 1860.893 kb on - strand, within ABIE51_RS08770at 1860.893 kb on - strand, within ABIE51_RS08770at 1861.124 kb on + strandat 1861.124 kb on + strandat 1861.125 kb on - strandat 1861.125 kb on - strandat 1861.181 kb on + strandat 1861.257 kb on + strandat 1861.257 kb on + strandat 1861.257 kb on + strandat 1861.430 kb on + strandat 1861.430 kb on + strandat 1861.430 kb on + strandat 1861.430 kb on + strandat 1861.431 kb on - strandat 1861.525 kb on + strandat 1861.525 kb on + strandat 1861.525 kb on + strandat 1861.526 kb on - strandat 1861.526 kb on - strandat 1861.526 kb on - strandat 1861.526 kb on - strandat 1861.526 kb on - strandat 1861.572 kb on + strandat 1861.572 kb on + strandat 1861.572 kb on + strandat 1861.572 kb on + strandat 1861.573 kb on - strandat 1861.573 kb on - strandat 1861.573 kb on - strandat 1861.829 kb on + strand, within ABIE51_RS08775at 1861.895 kb on + strand, within ABIE51_RS08775

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 1.3568235 mM
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1,859,632 + -0.1
1,859,635 + -0.1
1,859,688 + -0.1
1,859,688 + +0.3
1,859,938 + ABIE51_RS08765 0.17 +0.5
1,860,131 - ABIE51_RS08765 0.44 +0.6
1,860,202 + ABIE51_RS08765 0.54 -0.6
1,860,203 - ABIE51_RS08765 0.54 -0.0
1,860,628 + +0.2
1,860,628 + -0.2
1,860,629 - +0.3
1,860,629 - -0.5
1,860,629 - +0.3
1,860,892 + ABIE51_RS08770 0.53 +0.1
1,860,893 - ABIE51_RS08770 0.53 -0.3
1,860,893 - ABIE51_RS08770 0.53 -0.6
1,861,124 + -0.3
1,861,124 + -0.9
1,861,125 - -0.1
1,861,125 - +0.9
1,861,181 + -0.5
1,861,257 + -0.3
1,861,257 + +0.5
1,861,257 + -0.6
1,861,430 + -0.2
1,861,430 + -0.4
1,861,430 + -0.1
1,861,430 + +1.6
1,861,431 - +0.1
1,861,525 + +0.0
1,861,525 + -0.1
1,861,525 + +0.5
1,861,526 - +1.1
1,861,526 - -0.5
1,861,526 - +1.1
1,861,526 - +0.0
1,861,526 - -0.2
1,861,572 + +0.3
1,861,572 + +0.6
1,861,572 + -0.6
1,861,572 + -0.4
1,861,573 - -0.0
1,861,573 - +1.4
1,861,573 - +0.3
1,861,829 + ABIE51_RS08775 0.11 +1.2
1,861,895 + ABIE51_RS08775 0.15 +0.9

Or see this region's nucleotide sequence