Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS08435

Experiment: R2A with 1-octen-3-ol 1.3568235 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS08425 and ABIE51_RS08430 are separated by 57 nucleotidesABIE51_RS08430 and ABIE51_RS08435 are separated by 109 nucleotidesABIE51_RS08435 and ABIE51_RS08440 are separated by 66 nucleotides ABIE51_RS08425: ABIE51_RS08425 - RNA polymerase sigma-70 factor, at 1,792,178 to 1,793,038 _RS08425 ABIE51_RS08430: ABIE51_RS08430 - carboxymuconolactone decarboxylase family protein, at 1,793,096 to 1,793,545 _RS08430 ABIE51_RS08435: ABIE51_RS08435 - hypothetical protein, at 1,793,655 to 1,794,071 _RS08435 ABIE51_RS08440: ABIE51_RS08440 - HAMP domain-containing sensor histidine kinase, at 1,794,138 to 1,795,409 _RS08440 Position (kb) 1793 1794 1795Strain fitness (log2 ratio) -1 0 1at 1792.845 kb on - strand, within ABIE51_RS08425at 1792.995 kb on + strandat 1792.996 kb on - strandat 1792.996 kb on - strandat 1793.521 kb on - strandat 1793.521 kb on - strandat 1793.521 kb on - strandat 1793.588 kb on + strandat 1793.589 kb on - strandat 1793.589 kb on - strandat 1793.993 kb on - strand, within ABIE51_RS08435at 1794.103 kb on + strandat 1794.104 kb on - strandat 1794.104 kb on - strandat 1794.287 kb on - strand, within ABIE51_RS08440at 1794.805 kb on + strand, within ABIE51_RS08440at 1794.806 kb on - strand, within ABIE51_RS08440at 1794.806 kb on - strand, within ABIE51_RS08440

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 1.3568235 mM
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1,792,845 - ABIE51_RS08425 0.77 -0.5
1,792,995 + -0.6
1,792,996 - -1.4
1,792,996 - +1.5
1,793,521 - -0.3
1,793,521 - +0.3
1,793,521 - +0.1
1,793,588 + +0.8
1,793,589 - -0.1
1,793,589 - -0.3
1,793,993 - ABIE51_RS08435 0.81 -0.8
1,794,103 + +0.1
1,794,104 - -0.1
1,794,104 - -0.0
1,794,287 - ABIE51_RS08440 0.12 +0.0
1,794,805 + ABIE51_RS08440 0.52 -0.0
1,794,806 - ABIE51_RS08440 0.53 -0.1
1,794,806 - ABIE51_RS08440 0.53 -0.4

Or see this region's nucleotide sequence