Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS04655

Experiment: R2A with 1-octen-3-ol 1.3568235 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS04645 and ABIE51_RS04650 are separated by 85 nucleotidesABIE51_RS04650 and ABIE51_RS04655 overlap by 4 nucleotidesABIE51_RS04655 and ABIE51_RS04660 are separated by 70 nucleotides ABIE51_RS04645: ABIE51_RS04645 - 3,4-dihydroxy-2-butanone-4-phosphate synthase, at 1,006,291 to 1,007,403 _RS04645 ABIE51_RS04650: ABIE51_RS04650 - 6,7-dimethyl-8-ribityllumazine synthase, at 1,007,489 to 1,007,956 _RS04650 ABIE51_RS04655: ABIE51_RS04655 - transcription antitermination factor NusB, at 1,007,953 to 1,008,414 _RS04655 ABIE51_RS04660: ABIE51_RS04660 - thiamine-phosphate kinase, at 1,008,485 to 1,009,453 _RS04660 Position (kb) 1007 1008 1009Strain fitness (log2 ratio) -1 0 1at 1007.202 kb on + strand, within ABIE51_RS04645at 1007.384 kb on - strandat 1007.434 kb on - strandat 1007.459 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 1.3568235 mM
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1,007,202 + ABIE51_RS04645 0.82 -0.6
1,007,384 - +0.3
1,007,434 - -0.3
1,007,459 - +0.3

Or see this region's nucleotide sequence