Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3429

Experiment: pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 5.5
3,846,256	+				+1.2
3,846,362	+				+1.3
3,846,363	-				-0.9
3,846,387	-				+0.9
3,846,534	+				-0.0
3,846,534	+				+1.0
3,846,535	-				+0.2
3,846,535	-				-0.9
3,846,585	-				+0.3
3,846,762	-				+0.3
3,846,762	-				+0.1
3,847,205	+				-1.1
3,847,207	+				+0.3
3,847,335	+		Rv3429	0.32	+1.7
3,847,441	+		Rv3429	0.51	+1.7
3,847,442	-		Rv3429	0.52	-0.8
3,847,442	-		Rv3429	0.52	+0.0
3,847,447	+		Rv3429	0.53	-0.9
3,847,576	+		Rv3429	0.77	-1.4
3,847,576	+		Rv3429	0.77	+0.3
3,847,577	-		Rv3429	0.77	-0.4
3,847,577	-		Rv3429	0.77	-0.7
3,847,618	+		Rv3429	0.84	-0.7
3,847,644	-				-0.2
3,847,648	+				-0.7
3,847,700	-				+0.0
3,847,920	-		Rv3430c	0.24	+0.4
3,848,052	-		Rv3430c	0.35	+0.1
3,848,324	+		Rv3430c	0.59	+0.0
3,848,325	-		Rv3430c	0.59	-0.2
3,848,325	-		Rv3430c	0.59	-0.3
3,848,330	+		Rv3430c	0.59	-0.3
3,848,336	+		Rv3430c	0.60	-0.1
3,848,371	-		Rv3430c	0.63	+0.8
3,848,487	-		Rv3430c	0.73	-0.2
3,848,510	+		Rv3430c	0.75	+0.2
3,848,510	+		Rv3430c	0.75	-2.2
3,848,511	-		Rv3430c	0.75	+0.2
3,848,511	-		Rv3430c	0.75	+1.4
3,848,537	+		Rv3430c	0.77	-0.3
3,848,537	+		Rv3430c	0.77	+0.0
3,848,537	+		Rv3430c	0.77	-0.5
3,848,538	-		Rv3430c	0.77	-0.5
3,848,538	-		Rv3430c	0.77	-1.7
3,848,590	+		Rv3430c	0.81	-0.1
3,848,591	-		Rv3430c	0.82	-0.3
3,848,680	-		Rv3430c	0.89	+0.1