Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3171c

Experiment: pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 5.5
3,539,070	-		Rv3170	0.42	+1.6
3,539,073	+		Rv3170	0.42	+0.8
3,539,073	+		Rv3170	0.42	+0.2
3,539,074	-		Rv3170	0.42	+0.2
3,539,789	+				-0.8
3,539,847	+				+0.9
3,540,036	-		Rv3171c	0.21	-3.7
3,540,540	+		Rv3171c	0.77	-1.2
3,540,762	-				-0.2
3,540,915	-				+0.4
3,540,915	-				-0.2
3,540,980	+		Rv3172c	0.20	-0.3
3,540,980	+		Rv3172c	0.20	-0.4
3,541,081	+		Rv3172c	0.41	-0.4
3,541,081	+		Rv3172c	0.41	+0.9
3,541,081	+		Rv3172c	0.41	-0.1
3,541,082	-		Rv3172c	0.41	-0.6
3,541,162	-		Rv3172c	0.58	-0.1
3,541,268	-		Rv3172c	0.80	+0.1
3,541,268	-		Rv3172c	0.80	-0.7
3,541,289	-		Rv3172c	0.84	-0.4
3,541,291	+		Rv3172c	0.85	-0.9
3,541,291	+		Rv3172c	0.85	-1.8
3,541,291	+		Rv3172c	0.85	-1.1
3,541,375	+				-1.2
3,541,375	+				-0.1
3,541,634	-		Rv3173c	0.32	-0.2