Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1034c

Experiment: pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 5.5
1,157,985	+				-0.2
1,157,985	+				-0.2
1,157,985	+				+0.7
1,157,985	+				+0.6
1,157,985	+				-1.4
1,157,986	-				+0.1
1,157,986	-				-1.2
1,157,986	-				+0.2
1,158,005	-				-2.6
1,158,048	+		Rv1033c	0.11	-0.9
1,158,049	-		Rv1033c	0.11	-0.2
1,158,056	-		Rv1033c	0.12	-0.4
1,158,056	-		Rv1033c	0.12	-0.3
1,158,056	-		Rv1033c	0.12	-0.5
1,158,057	+		Rv1033c	0.12	+1.3
1,158,057	+		Rv1033c	0.12	-0.2
1,158,058	-		Rv1033c	0.12	+0.7
1,158,058	-		Rv1033c	0.12	+0.0
1,158,058	-		Rv1033c	0.12	-0.5
1,158,093	+		Rv1033c	0.17	-0.2
1,158,094	-		Rv1033c	0.17	-0.3
1,158,200	-		Rv1033c	0.31	-1.4
1,158,213	-		Rv1033c	0.32	-0.4
1,158,238	+		Rv1033c	0.36	-1.3
1,158,239	-		Rv1033c	0.36	-0.5
1,158,239	-		Rv1033c	0.36	-0.2
1,158,239	-		Rv1033c	0.36	-0.0
1,158,351	+		Rv1033c	0.50	+1.7
1,158,351	+		Rv1033c	0.50	+1.0
1,158,351	+		Rv1033c	0.50	+0.1
1,158,429	+		Rv1033c	0.60	+0.5
1,158,579	+		Rv1033c	0.80	+0.7
1,158,580	-		Rv1033c	0.80	-1.4
1,158,718	-				+0.0
1,158,745	-				-0.4
1,158,745	-				+0.6
1,158,813	+				+0.3
1,158,896	+				-0.3
1,159,516	+		Rv1035c	0.21	+1.3
1,159,902	-		Rv1035c	0.77	+0.6
1,160,177	+		Rv1036c	0.24	+0.1
1,160,178	-		Rv1036c	0.24	-0.6
1,160,178	-		Rv1036c	0.24	-0.8
1,160,178	-		Rv1036c	0.24	-0.8
1,160,178	-		Rv1036c	0.24	-0.1