Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv0487

Experiment: pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 5.5
576,689	+				+0.1
576,853	+		Rv0487	0.12	+0.8
576,853	+		Rv0487	0.12	-0.3
577,013	+		Rv0487	0.41	-0.2
577,013	+		Rv0487	0.41	-1.1
577,013	+		Rv0487	0.41	-1.2
577,014	-		Rv0487	0.41	-1.3
577,014	-		Rv0487	0.41	-0.8
577,014	-		Rv0487	0.41	+1.1
577,060	+		Rv0487	0.49	-1.4
577,087	+		Rv0487	0.54	-1.6
577,088	-		Rv0487	0.55	-1.8
577,157	+		Rv0487	0.67	+0.5
577,158	-		Rv0487	0.67	-0.3
577,158	-		Rv0487	0.67	-0.7
577,284	-				-1.6
577,337	-				+1.1
577,337	-				-0.5
577,337	-				-1.7
577,337	-				-0.7
577,337	-				-0.3
577,337	-				+1.3
577,337	-				+2.1
577,498	+				-0.2
577,499	-				-0.2
577,499	-				-0.5
577,619	+				-0.7
577,734	-		Rv0488	0.12	-1.1
577,734	-		Rv0488	0.12	-0.5
577,832	-		Rv0488	0.28	-0.4
578,003	+		Rv0488	0.56	-0.6
578,003	+		Rv0488	0.56	+0.5
578,098	-		Rv0488	0.72	-0.1
578,098	-		Rv0488	0.72	-0.4
578,098	-		Rv0488	0.72	+0.1
578,278	+				+0.2
578,291	+				-0.2
578,291	+				-0.1