Experiment: pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0402c and Rv0403c overlap by 4 nucleotides Rv0403c and Rv0404 are separated by 320 nucleotides
Rv0402c: Rv0402c - Probable conserved transmembrane transport protein MmpL1, at 480,355 to 483,231
Rv0402c
Rv0403c: Rv0403c - Probable conserved membrane protein MmpS1, at 483,228 to 483,656
Rv0403c
Rv0404: Rv0404 - Fatty-acid-AMP ligase FadD30 (fatty-acid-AMP synthetase) (fatty-acid-AMP synthase), at 483,977 to 485,734
Rv0404
Position (kb) 483
484 Strain fitness (log2 ratio) -2
-1
0
1 at 482.301 kb on - strand, within Rv0402c at 482.366 kb on + strand, within Rv0402c at 482.436 kb on - strand, within Rv0402c at 482.487 kb on + strand, within Rv0402c at 482.488 kb on - strand, within Rv0402c at 482.597 kb on + strand, within Rv0402c at 482.671 kb on + strand, within Rv0402c at 482.672 kb on - strand, within Rv0402c at 482.711 kb on + strand, within Rv0402c at 482.711 kb on + strand, within Rv0402c at 482.822 kb on + strand, within Rv0402c at 482.823 kb on - strand, within Rv0402c at 482.823 kb on - strand, within Rv0402c at 482.939 kb on + strand, within Rv0402c at 483.073 kb on + strand at 483.135 kb on + strand at 483.387 kb on - strand, within Rv0403c at 483.387 kb on - strand, within Rv0403c at 483.446 kb on - strand, within Rv0403c at 483.488 kb on - strand, within Rv0403c at 483.615 kb on + strand at 483.615 kb on + strand at 483.616 kb on - strand at 483.616 kb on - strand at 483.616 kb on - strand at 483.815 kb on + strand at 483.987 kb on + strand at 484.199 kb on + strand, within Rv0404 at 484.199 kb on + strand, within Rv0404 at 484.300 kb on - strand, within Rv0404 at 484.386 kb on + strand, within Rv0404 at 484.387 kb on - strand, within Rv0404 at 484.391 kb on - strand, within Rv0404 at 484.411 kb on + strand, within Rv0404 at 484.634 kb on + strand, within Rv0404
Per-strain Table
Position Strand Gene LocusTag Fraction pH 5.5 remove 482,301 - Rv0402c 0.68 -0.6 482,366 + Rv0402c 0.70 -0.7 482,436 - Rv0402c 0.72 +0.0 482,487 + Rv0402c 0.74 +0.2 482,488 - Rv0402c 0.74 +0.1 482,597 + Rv0402c 0.78 -0.3 482,671 + Rv0402c 0.81 +0.2 482,672 - Rv0402c 0.81 -0.6 482,711 + Rv0402c 0.82 +0.0 482,711 + Rv0402c 0.82 -0.4 482,822 + Rv0402c 0.86 -0.3 482,823 - Rv0402c 0.86 -0.4 482,823 - Rv0402c 0.86 +0.1 482,939 + Rv0402c 0.90 -0.8 483,073 + +0.1 483,135 + +0.2 483,387 - Rv0403c 0.37 -0.1 483,387 - Rv0403c 0.37 -0.4 483,446 - Rv0403c 0.51 -0.6 483,488 - Rv0403c 0.61 +0.8 483,615 + +0.3 483,615 + -0.2 483,616 - -2.3 483,616 - -0.2 483,616 - -0.6 483,815 + -0.2 483,987 + -0.4 484,199 + Rv0404 0.13 -0.8 484,199 + Rv0404 0.13 -0.3 484,300 - Rv0404 0.18 -1.1 484,386 + Rv0404 0.23 -0.3 484,387 - Rv0404 0.23 -0.0 484,391 - Rv0404 0.24 -0.9 484,411 + Rv0404 0.25 -0.7 484,634 + Rv0404 0.37 +1.3
Or see this region's nucleotide sequence