Experiment: pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0260c and Rv0261c are separated by 99 nucleotides Rv0261c and Rv0262c are separated by 140 nucleotides Rv0262c and Rv0263c are separated by 9 nucleotides
Rv0260c: Rv0260c - Possible transcriptional regulatory protein, at 311,514 to 312,659
Rv0260c
Rv0261c: Rv0261c - Probable integral membrane nitrite extrusion protein NarK3 (nitrite facilitator), at 312,759 to 314,168
Rv0261c
Rv0262c: Rv0262c - Aminoglycoside 2'-N-acetyltransferase Aac (Aac(2')-IC), at 314,309 to 314,854
Rv0262c
Rv0263c: Rv0263c - Conserved hypothetical protein, at 314,864 to 315,766
Rv0263c
Position (kb) 312
313
314
315 Strain fitness (log2 ratio) -2
-1
0
1 at 312.009 kb on + strand, within Rv0260c at 312.103 kb on - strand, within Rv0260c at 312.227 kb on + strand, within Rv0260c at 312.227 kb on + strand, within Rv0260c at 312.659 kb on + strand at 312.660 kb on - strand at 312.835 kb on + strand at 312.868 kb on + strand at 312.869 kb on - strand at 313.245 kb on + strand, within Rv0261c at 313.291 kb on + strand, within Rv0261c at 313.291 kb on + strand, within Rv0261c at 313.451 kb on - strand, within Rv0261c at 313.541 kb on - strand, within Rv0261c at 313.582 kb on + strand, within Rv0261c at 313.583 kb on - strand, within Rv0261c at 313.585 kb on - strand, within Rv0261c at 313.585 kb on - strand, within Rv0261c at 313.918 kb on + strand, within Rv0261c at 314.169 kb on - strand at 314.179 kb on - strand at 314.310 kb on + strand at 314.478 kb on + strand, within Rv0262c at 314.523 kb on + strand, within Rv0262c at 314.617 kb on - strand, within Rv0262c at 314.617 kb on - strand, within Rv0262c at 314.643 kb on + strand, within Rv0262c at 314.880 kb on - strand at 315.117 kb on - strand, within Rv0263c
Per-strain Table
Position Strand Gene LocusTag Fraction pH 5.5 remove 312,009 + Rv0260c 0.43 -0.5 312,103 - Rv0260c 0.51 -1.3 312,227 + Rv0260c 0.62 -1.3 312,227 + Rv0260c 0.62 -0.1 312,659 + +0.1 312,660 - +0.3 312,835 + +0.4 312,868 + -0.0 312,869 - +0.6 313,245 + Rv0261c 0.34 -0.7 313,291 + Rv0261c 0.38 +0.1 313,291 + Rv0261c 0.38 -0.8 313,451 - Rv0261c 0.49 -0.3 313,541 - Rv0261c 0.55 +0.5 313,582 + Rv0261c 0.58 -0.2 313,583 - Rv0261c 0.58 +0.1 313,585 - Rv0261c 0.59 -1.0 313,585 - Rv0261c 0.59 -0.4 313,918 + Rv0261c 0.82 -0.7 314,169 - +0.9 314,179 - -0.2 314,310 + -0.0 314,478 + Rv0262c 0.31 -0.9 314,523 + Rv0262c 0.39 -0.4 314,617 - Rv0262c 0.56 -1.6 314,617 - Rv0262c 0.56 -0.4 314,643 + Rv0262c 0.61 -2.4 314,880 - +0.1 315,117 - Rv0263c 0.28 -0.4
Or see this region's nucleotide sequence