Experiment: pH 4.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv3918c and Rv3919c overlap by 4 nucleotides Rv3919c and Rv3920c are separated by 131 nucleotides Rv3920c and Rv3921c are separated by 71 nucleotides
Rv3918c: Rv3918c - Probable chromosome partitioning protein ParA, at 4,406,488 to 4,407,531
Rv3918c
Rv3919c: Rv3919c - Probable glucose-inhibited division protein B Gid, at 4,407,528 to 4,408,202
Rv3919c
Rv3920c: Rv3920c - Conserved protein similar to jag protein, at 4,408,334 to 4,408,897
Rv3920c
Rv3921c: Rv3921c - Probable conserved transmembrane protein, at 4,408,969 to 4,410,069
Rv3921c
Position (kb) 4407
4408
4409 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4408.056 kb on + strand, within Rv3919c at 4408.071 kb on + strand, within Rv3919c at 4408.072 kb on - strand, within Rv3919c at 4408.077 kb on - strand, within Rv3919c at 4408.203 kb on + strand at 4408.203 kb on + strand at 4408.203 kb on + strand at 4408.204 kb on - strand at 4408.299 kb on + strand at 4408.300 kb on - strand at 4408.336 kb on - strand at 4408.553 kb on + strand, within Rv3920c at 4408.554 kb on - strand, within Rv3920c at 4408.554 kb on - strand, within Rv3920c
Per-strain Table
Position Strand Gene LocusTag Fraction pH 4.5 remove 4,408,056 + Rv3919c 0.78 +1.8 4,408,071 + Rv3919c 0.80 -1.0 4,408,072 - Rv3919c 0.81 -0.8 4,408,077 - Rv3919c 0.81 -0.1 4,408,203 + -0.5 4,408,203 + -1.1 4,408,203 + -0.4 4,408,204 - +0.3 4,408,299 + -0.1 4,408,300 - -1.7 4,408,336 - -0.6 4,408,553 + Rv3920c 0.39 -1.0 4,408,554 - Rv3920c 0.39 -2.0 4,408,554 - Rv3920c 0.39 +0.8
Or see this region's nucleotide sequence