Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3917c

Experiment: pH 4.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRv3916c and Rv3917c are separated by 289 nucleotidesRv3917c and Rv3918c overlap by 4 nucleotides Rv3916c: Rv3916c - Conserved hypothetical protein, at 4,404,433 to 4,405,167 Rv3916c Rv3917c: Rv3917c - Probable chromosome partitioning protein ParB, at 4,405,457 to 4,406,491 Rv3917c Rv3918c: Rv3918c - Probable chromosome partitioning protein ParA, at 4,406,488 to 4,407,531 Rv3918c Position (kb) 4405 4406 4407Strain fitness (log2 ratio) -2 -1 0 1at 4405.209 kb on - strandat 4405.277 kb on + strandat 4405.454 kb on + strandat 4405.454 kb on + strandat 4405.484 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pH 4.5
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4,405,209 - +1.3
4,405,277 + -2.4
4,405,454 + -1.3
4,405,454 + -1.2
4,405,484 - +0.4

Or see this region's nucleotide sequence