Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3440c

Experiment: pH 4.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 4.5
3,859,037	+		Rv3439c	0.55	-0.3
3,859,037	+		Rv3439c	0.55	-0.6
3,859,038	-		Rv3439c	0.55	+0.0
3,859,038	-		Rv3439c	0.55	+0.1
3,859,109	+		Rv3439c	0.61	-0.5
3,859,109	+		Rv3439c	0.61	-0.1
3,859,117	+		Rv3439c	0.61	-0.1
3,859,117	+		Rv3439c	0.61	+0.3
3,859,118	-		Rv3439c	0.61	-1.5
3,859,417	-		Rv3439c	0.82	-0.7
3,859,417	-		Rv3439c	0.82	-1.3
3,859,592	+				+0.2
3,859,789	-		Rv3440c	0.40	-0.3
3,859,927	+		Rv3440c	0.84	-1.5
3,859,928	-		Rv3440c	0.84	-0.4
3,859,938	+		Rv3440c	0.88	-1.7
3,859,938	+		Rv3440c	0.88	+1.4
3,859,938	+		Rv3440c	0.88	-2.0
3,859,939	-		Rv3440c	0.88	-0.3
3,859,939	-		Rv3440c	0.88	-0.4
3,859,939	-		Rv3440c	0.88	-1.1
3,859,939	-		Rv3440c	0.88	+0.0
3,859,939	-		Rv3440c	0.88	-2.2
3,859,939	-		Rv3440c	0.88	-0.8
3,859,939	-		Rv3440c	0.88	-1.1
3,859,939	-		Rv3440c	0.88	-0.6
3,859,945	-				-0.9
3,859,945	-				+0.3
3,859,945	-				+1.7
3,859,959	+				-0.1
3,859,959	+				+0.2