Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3158

Experiment: pH 4.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 4.5
3,525,114	-		Rv3157	0.59	+0.0
3,525,246	-		Rv3157	0.67	+0.9
3,525,519	-		Rv3157	0.83	+0.6
3,525,533	+		Rv3157	0.84	+0.2
3,525,633	+				+3.3
3,525,817	+				-0.7
3,526,055	+		Rv3158	0.17	-0.3
3,526,055	+		Rv3158	0.17	+0.8
3,526,055	+		Rv3158	0.17	-1.3
3,526,056	-		Rv3158	0.17	+2.0
3,526,408	+		Rv3158	0.39	+0.1
3,526,572	-		Rv3158	0.49	+1.3
3,526,572	-		Rv3158	0.49	+0.0
3,526,572	-		Rv3158	0.49	+0.1
3,526,574	+		Rv3158	0.49	+0.3
3,526,574	+		Rv3158	0.49	+0.2
3,526,575	-		Rv3158	0.49	+0.3
3,526,575	-		Rv3158	0.49	+0.2
3,526,575	-		Rv3158	0.49	+2.0
3,526,705	+		Rv3158	0.57	+1.7
3,526,706	-		Rv3158	0.57	-0.0
3,526,818	+		Rv3158	0.64	+0.6
3,526,818	+		Rv3158	0.64	-2.0
3,526,818	+		Rv3158	0.64	+1.5
3,526,819	-		Rv3158	0.64	+1.0
3,526,819	-		Rv3158	0.64	+0.9
3,526,819	-		Rv3158	0.64	+0.7
3,526,819	-		Rv3158	0.64	+0.3
3,526,829	-		Rv3158	0.65	+1.4
3,526,856	+		Rv3158	0.67	+1.7
3,526,861	-		Rv3158	0.67	+0.3
3,526,861	-		Rv3158	0.67	-0.7
3,526,861	-		Rv3158	0.67	+2.9
3,527,040	+		Rv3158	0.78	+2.0
3,527,197	+		Rv3158	0.88	-0.3
3,527,203	+		Rv3158	0.89	+0.3
3,527,204	-		Rv3158	0.89	+0.3
3,527,300	+				-0.0
3,527,300	+				+0.5
3,527,309	+				+2.3
3,527,309	+				+0.4
3,527,589	-		Rv3159c	0.11	+0.3
3,527,624	-		Rv3159c	0.13	-1.0