Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1722

Experiment: pH 4.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 4.5
1,947,056	+				+0.7
1,947,095	+		Rv1720c	0.17	-0.6
1,947,096	-		Rv1720c	0.17	+0.0
1,947,131	-		Rv1720c	0.26	-0.3
1,947,131	-		Rv1720c	0.26	+2.5
1,947,131	-		Rv1720c	0.26	+0.1
1,947,150	-		Rv1720c	0.31	+0.3
1,947,170	-		Rv1720c	0.36	+0.5
1,947,960	+				+0.2
1,947,961	-				-1.6
1,947,999	+				-2.2
1,947,999	+				-0.2
1,947,999	+				+0.4
1,947,999	+				+0.2
1,948,000	-				+0.5
1,948,000	-				+0.8
1,948,032	+		Rv1722	0.12	+2.0
1,948,032	+		Rv1722	0.12	+0.2
1,948,033	-		Rv1722	0.12	-0.2
1,948,033	-		Rv1722	0.12	+0.2
1,948,036	-		Rv1722	0.12	+0.2
1,948,036	-		Rv1722	0.12	-1.7
1,948,036	-		Rv1722	0.12	-0.1
1,948,036	-		Rv1722	0.12	+0.3
1,948,362	+		Rv1722	0.34	+0.5
1,948,362	+		Rv1722	0.34	+0.3
1,948,363	-		Rv1722	0.34	+0.9
1,948,499	-		Rv1722	0.43	+0.3
1,948,499	-		Rv1722	0.43	+0.3
1,948,758	+		Rv1722	0.60	-0.4
1,948,908	+		Rv1722	0.71	+0.7
1,948,909	-		Rv1722	0.71	+0.4
1,948,923	+		Rv1722	0.72	-0.6
1,949,142	+		Rv1722	0.86	-1.1
1,949,142	+		Rv1722	0.86	+0.4
1,949,143	-		Rv1722	0.86	+1.2
1,949,143	-		Rv1722	0.86	-0.4
1,949,143	-		Rv1722	0.86	+0.5
1,949,232	+				-0.4
1,949,232	+				+1.5
1,949,233	-				-0.7
1,949,619	-		Rv1723	0.22	+1.2
1,949,619	-		Rv1723	0.22	-1.5
1,949,744	+		Rv1723	0.32	-0.6
1,949,744	+		Rv1723	0.32	+0.1
1,949,744	+		Rv1723	0.32	+0.2
1,949,745	-		Rv1723	0.32	+0.2
1,949,745	-		Rv1723	0.32	-0.2
1,949,772	-		Rv1723	0.34	-0.6
1,949,834	+		Rv1723	0.39	-0.3
1,949,834	+		Rv1723	0.39	-2.4
1,949,835	-		Rv1723	0.40	+0.0
1,949,835	-		Rv1723	0.40	-0.5
1,949,927	+		Rv1723	0.47	-0.1
1,949,927	+		Rv1723	0.47	-0.0
1,950,057	+		Rv1723	0.57	+0.1
1,950,057	+		Rv1723	0.57	-0.7
1,950,057	+		Rv1723	0.57	-1.2
1,950,058	-		Rv1723	0.57	-1.3
1,950,102	+		Rv1723	0.61	-3.2
1,950,108	+		Rv1723	0.61	-0.3
1,950,108	+		Rv1723	0.61	-0.5
1,950,133	-		Rv1723	0.63	-1.6
1,950,188	+		Rv1723	0.68	-1.5
1,950,189	-		Rv1723	0.68	+0.5
1,950,326	+		Rv1723	0.79	-0.0
1,950,327	-		Rv1723	0.79	-0.1