Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1667c

Experiment: pH 4.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 4.5
1,892,583	+		Rv1666c	0.24	-0.1
1,892,584	-		Rv1666c	0.24	-1.1
1,892,715	+		Rv1666c	0.34	+0.1
1,892,716	-		Rv1666c	0.34	-0.0
1,892,820	+		Rv1666c	0.43	-1.8
1,892,911	+		Rv1666c	0.50	+0.3
1,892,911	+		Rv1666c	0.50	-0.6
1,892,912	-		Rv1666c	0.50	-0.0
1,893,146	+		Rv1666c	0.68	-0.0
1,893,146	+		Rv1666c	0.68	+0.3
1,893,213	+		Rv1666c	0.73	+0.1
1,893,213	+		Rv1666c	0.73	-0.4
1,893,213	+		Rv1666c	0.73	-0.4
1,893,214	-		Rv1666c	0.73	-1.3
1,893,214	-		Rv1666c	0.73	-0.1
1,893,262	+		Rv1666c	0.77	+0.0
1,893,471	+				-0.6
1,893,471	+				+0.3
1,893,472	-				-1.0
1,893,472	-				-0.1
1,893,477	+				-2.4
1,893,477	+				+1.7
1,893,477	+				+0.3
1,893,478	-				+0.8
1,893,478	-				+0.4
1,893,478	-				-0.1
1,893,525	+				+1.2
1,893,571	-				+0.1
1,893,571	-				+0.3
1,893,571	-				-2.1
1,893,646	+		Rv1667c	0.11	-0.1
1,893,646	+		Rv1667c	0.11	-0.4
1,893,646	+		Rv1667c	0.11	+0.4
1,893,646	+		Rv1667c	0.11	+0.2
1,893,646	+		Rv1667c	0.11	-0.3
1,893,646	+		Rv1667c	0.11	-0.6
1,893,646	+		Rv1667c	0.11	+0.5
1,893,647	-		Rv1667c	0.11	+1.5
1,893,647	-		Rv1667c	0.11	-0.5
1,893,647	-		Rv1667c	0.11	+1.7
1,893,647	-		Rv1667c	0.11	-1.1
1,893,647	-		Rv1667c	0.11	-0.1
1,893,708	+		Rv1667c	0.20	+0.5
1,893,864	-		Rv1667c	0.44	-0.3
1,893,914	+		Rv1667c	0.52	-2.2
1,893,972	+		Rv1667c	0.60	+0.9
1,894,166	-				-0.2
1,894,166	-				-0.1
1,894,166	-				-0.2
1,894,225	+				+1.2
1,894,457	-		Rv1668c	0.21	-0.8
1,894,457	-		Rv1668c	0.21	-2.4
1,894,712	-		Rv1668c	0.44	-0.3
1,894,815	+		Rv1668c	0.53	+0.3
1,894,827	-		Rv1668c	0.54	+0.0
1,894,848	+		Rv1668c	0.56	-1.2
1,894,848	+		Rv1668c	0.56	+1.5