Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1479

Experiment: pH 4.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 4.5
1,668,382	+				-3.9
1,668,394	+				-3.1
1,668,404	-				+0.9
1,668,407	-				+2.2
1,668,758	+		Rv1478	0.47	-0.1
1,668,758	+		Rv1478	0.47	-1.2
1,668,759	-		Rv1478	0.47	-1.6
1,668,798	-		Rv1478	0.52	-2.1
1,668,890	+		Rv1478	0.65	-0.3
1,668,941	+		Rv1478	0.72	+1.2
1,668,941	+		Rv1478	0.72	-0.6
1,668,941	+		Rv1478	0.72	-0.2
1,668,942	-		Rv1478	0.72	-0.3
1,668,942	-		Rv1478	0.72	-1.3
1,668,942	-		Rv1478	0.72	-0.2
1,669,031	+		Rv1478	0.84	-0.5
1,669,032	-		Rv1478	0.84	-0.1
1,669,032	-		Rv1478	0.84	-1.7
1,669,032	-		Rv1478	0.84	-1.1
1,669,203	+				-2.0
1,669,203	+				-0.6
1,669,203	+				+0.6
1,669,204	+				-0.1
1,671,317	+				-2.0
1,671,376	+				+0.8