Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1453

Experiment: pH 4.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 4.5
1,638,046	-				+0.0
1,638,212	+				+1.7
1,638,212	+				-0.3
1,638,369	+				+0.1
1,638,410	-				-1.1
1,638,668	-		Rv1453	0.23	-1.3
1,638,668	-		Rv1453	0.23	-0.6
1,638,668	-		Rv1453	0.23	-0.5
1,638,690	+		Rv1453	0.24	+0.7
1,638,690	+		Rv1453	0.24	+0.7
1,638,691	-		Rv1453	0.24	-0.3
1,638,776	-		Rv1453	0.31	-0.8
1,638,960	+		Rv1453	0.46	+0.1
1,639,120	+		Rv1453	0.58	-0.4
1,639,121	-		Rv1453	0.58	-0.2
1,639,121	-		Rv1453	0.58	-1.8
1,639,121	-		Rv1453	0.58	-1.1
1,639,174	+		Rv1453	0.63	+0.1
1,639,175	-		Rv1453	0.63	-0.6
1,639,175	-		Rv1453	0.63	-1.6
1,639,675	+				-0.4
1,639,874	-		Rv1454c	0.20	-0.8
1,639,947	+		Rv1454c	0.28	+1.0
1,639,947	+		Rv1454c	0.28	-0.4
1,639,947	+		Rv1454c	0.28	-0.3
1,639,948	-		Rv1454c	0.28	-0.6
1,639,948	-		Rv1454c	0.28	-0.8
1,639,975	-		Rv1454c	0.30	+0.7
1,640,012	-		Rv1454c	0.34	-0.8
1,640,252	-		Rv1454c	0.59	-1.7
1,640,265	+		Rv1454c	0.60	+0.1
1,640,266	-		Rv1454c	0.60	+1.7
1,640,269	+		Rv1454c	0.60	+0.5
1,640,269	+		Rv1454c	0.60	-0.8
1,640,270	-		Rv1454c	0.60	-0.5
1,640,270	-		Rv1454c	0.60	+0.3
1,640,307	+		Rv1454c	0.64	-0.4
1,640,472	+		Rv1454c	0.81	-1.0
1,640,472	+		Rv1454c	0.81	+0.7
1,640,616	+				-0.6
1,640,617	-				-0.9
1,640,617	-				+0.2