Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1406

Experiment: pH 4.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 4.5
1,581,173	+				+0.5
1,581,174	-				+0.3
1,581,174	-				-0.5
1,581,203	+				-0.2
1,581,203	+				+0.7
1,581,204	-				-1.6
1,581,276	-		Rv1405c	0.16	-0.6
1,581,296	+		Rv1405c	0.18	-0.9
1,581,297	-		Rv1405c	0.18	-0.1
1,581,297	-		Rv1405c	0.18	+1.6
1,581,297	-		Rv1405c	0.18	-0.8
1,581,297	-		Rv1405c	0.18	-1.8
1,581,297	-		Rv1405c	0.18	-0.6
1,581,297	-		Rv1405c	0.18	+0.0
1,581,297	-		Rv1405c	0.18	+0.1
1,581,311	+		Rv1405c	0.20	-2.0
1,581,410	+		Rv1405c	0.32	-2.2
1,581,410	+		Rv1405c	0.32	+0.3
1,581,410	+		Rv1405c	0.32	-0.5
1,581,410	+		Rv1405c	0.32	-0.1
1,581,410	+		Rv1405c	0.32	-0.3
1,581,411	-		Rv1405c	0.32	-2.1
1,581,411	-		Rv1405c	0.32	-1.1
1,581,411	-		Rv1405c	0.32	-0.9
1,581,411	-		Rv1405c	0.32	+0.2
1,581,475	-		Rv1405c	0.40	-1.7
1,581,672	-		Rv1405c	0.64	-0.7
1,581,783	+		Rv1405c	0.77	-0.4
1,581,894	-				-0.7
1,581,894	-				-1.1
1,581,964	-				-0.4
1,581,986	+				+0.9
1,581,987	-				-0.9
1,582,046	+				-3.1
1,582,047	-				-0.6
1,582,047	-				-0.1
1,582,095	-				+2.2
1,583,278	+		Rv1407	0.13	+0.3
1,583,367	-		Rv1407	0.19	+0.5
1,583,367	-		Rv1407	0.19	-0.5
1,583,389	+		Rv1407	0.21	-1.0
1,583,786	-		Rv1407	0.50	-0.4
1,583,904	+		Rv1407	0.58	+0.9
1,584,030	-		Rv1407	0.68	+0.8