Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1266c

Experiment: pH 4.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 4.5
1,413,085	+				+0.3
1,413,085	+				-0.7
1,413,237	-				+0.1
1,413,237	-				-0.2
1,413,401	+		Rv1265	0.21	+0.7
1,414,114	-				+1.7
1,414,166	-		Rv1266c	0.11	-0.2
1,414,300	+		Rv1266c	0.18	-1.0
1,414,301	-		Rv1266c	0.18	-0.4
1,414,301	-		Rv1266c	0.18	-0.9
1,414,361	-		Rv1266c	0.21	-0.4
1,414,361	-		Rv1266c	0.21	-1.0
1,414,381	+		Rv1266c	0.22	-2.5
1,414,381	+		Rv1266c	0.22	+0.6
1,414,515	-		Rv1266c	0.30	-0.3
1,414,548	+		Rv1266c	0.31	-0.6
1,414,714	+		Rv1266c	0.40	-1.3
1,414,715	-		Rv1266c	0.40	+0.2
1,414,717	+		Rv1266c	0.40	-0.5
1,414,717	+		Rv1266c	0.40	-0.2
1,414,834	+		Rv1266c	0.46	-0.7
1,415,245	+		Rv1266c	0.68	+0.6
1,415,261	-		Rv1266c	0.69	-1.3
1,415,265	+		Rv1266c	0.69	-1.0
1,415,597	-		Rv1266c	0.87	-0.2
1,415,597	-		Rv1266c	0.87	-0.6
1,415,795	-				+0.7
1,415,877	+				+1.1
1,416,182	+				-0.3
1,416,476	+		Rv1267c	0.25	+0.7
1,416,477	-		Rv1267c	0.25	-0.7
1,416,666	-		Rv1267c	0.42	-0.6
1,416,701	+		Rv1267c	0.45	-2.6
1,416,702	-		Rv1267c	0.45	-0.9
1,416,702	-		Rv1267c	0.45	-0.8