Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1057

Experiment: pH 4.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 4.5
1,178,442	+				+0.8
1,178,443	-				+0.3
1,178,755	-				-0.5
1,178,768	+				-0.6
1,178,936	-				-0.5
1,178,936	-				-0.8
1,178,952	-				-1.1
1,179,223	-				+0.7
1,179,223	-				-0.3
1,179,345	-				-1.4
1,179,551	-		Rv1057	0.13	+2.3
1,179,679	-		Rv1057	0.24	-0.3
1,179,804	+		Rv1057	0.35	-0.0
1,179,804	+		Rv1057	0.35	-0.6
1,179,804	+		Rv1057	0.35	-1.1
1,179,805	-		Rv1057	0.35	-2.7
1,179,805	-		Rv1057	0.35	-2.4
1,179,805	-		Rv1057	0.35	-2.6
1,179,805	-		Rv1057	0.35	-0.6
1,179,805	-		Rv1057	0.35	-0.5
1,179,805	-		Rv1057	0.35	-0.4
1,179,805	-		Rv1057	0.35	-0.8
1,179,805	-		Rv1057	0.35	+0.5
1,179,810	+		Rv1057	0.35	-0.6
1,179,810	+		Rv1057	0.35	-2.4
1,179,810	+		Rv1057	0.35	-1.6
1,179,811	-		Rv1057	0.35	-0.6
1,179,811	-		Rv1057	0.35	+1.7
1,179,811	-		Rv1057	0.35	+2.7
1,179,886	+		Rv1057	0.41	-0.6
1,179,886	+		Rv1057	0.41	-1.2
1,179,954	+		Rv1057	0.47	+0.7
1,180,077	-		Rv1057	0.58	-1.0
1,180,170	+		Rv1057	0.65	-2.8
1,180,171	-		Rv1057	0.66	-1.2
1,180,425	+		Rv1057	0.87	-1.2
1,180,426	-		Rv1057	0.87	-1.3
1,180,426	-		Rv1057	0.87	-1.4
1,180,426	-		Rv1057	0.87	+0.3
1,180,431	+		Rv1057	0.88	-1.7
1,180,431	+		Rv1057	0.88	-1.3
1,180,432	-		Rv1057	0.88	-0.5
1,180,432	-		Rv1057	0.88	+0.6
1,180,432	-		Rv1057	0.88	-1.1
1,180,443	+		Rv1057	0.89	-1.1
1,180,510	+				-1.3
1,180,526	+				+2.1
1,180,526	+				+1.0
1,180,575	+				-1.4
1,180,669	+				-0.0
1,180,687	+				+0.3
1,180,688	-				+3.7
1,180,801	-				-0.2
1,180,921	+		Rv1058	0.15	+1.3
1,180,922	-		Rv1058	0.15	-1.5
1,181,088	+		Rv1058	0.25	-0.8
1,181,398	+		Rv1058	0.44	+0.7
1,181,536	+		Rv1058	0.52	-2.3
1,181,537	-		Rv1058	0.52	+1.2