Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv0408

Experiment: pH 4.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 4.5
490,799	+				+1.6
490,804	+				+0.7
490,804	+				-1.1
490,805	-				+0.6
490,805	-				+2.7
491,196	-		Rv0407	0.41	+0.6
491,245	+		Rv0407	0.46	-1.9
491,300	-		Rv0407	0.51	+0.8
491,390	-		Rv0407	0.60	+0.5
491,486	-		Rv0407	0.70	+1.5
491,673	-		Rv0407	0.88	+0.7
491,680	+		Rv0407	0.89	+1.2
491,681	-		Rv0407	0.89	+1.4
491,681	-		Rv0407	0.89	-0.9
491,982	-				+0.7
492,359	+		Rv0408	0.28	+1.3
492,360	-		Rv0408	0.28	+1.2
492,435	+		Rv0408	0.31	-1.3
492,869	-		Rv0408	0.52	+1.9
492,888	-		Rv0408	0.53	+1.8
493,356	+		Rv0408	0.76	+2.1
493,357	-		Rv0408	0.76	+1.6
493,364	+		Rv0408	0.76	+1.7
493,700	+				+1.6
493,806	+				+1.8
493,807	-				+1.3
494,287	-		Rv0409	0.38	+1.6
494,358	+		Rv0409	0.44	+1.4
494,359	-		Rv0409	0.44	+0.3
494,359	-		Rv0409	0.44	+1.1
494,557	-		Rv0409	0.61	+1.6
494,666	-		Rv0409	0.70	-0.9
494,745	+		Rv0409	0.77	+0.9
494,852	+		Rv0409	0.86	-0.5