Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv0101

Experiment: pH 4.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 4.5
109,286	-		Rv0099	0.70	-0.1
109,286	-		Rv0099	0.70	-1.0
109,822	+		Rv0100	0.16	-0.2
109,916	+		Rv0100	0.56	+0.3
109,917	-		Rv0100	0.57	+1.7
110,041	-				-0.7
110,075	-				-0.2
110,075	-				+0.0
110,149	+				+0.6
111,148	+		Rv0101	0.15	-0.3
111,148	+		Rv0101	0.15	+0.4
111,148	+		Rv0101	0.15	+0.6
111,726	+		Rv0101	0.23	-0.3
111,750	-		Rv0101	0.23	-0.2
112,514	-		Rv0101	0.33	-0.4
112,923	-		Rv0101	0.39	-1.4
112,926	+		Rv0101	0.39	+0.2
112,927	-		Rv0101	0.39	-0.9
113,113	+		Rv0101	0.41	-0.0
113,114	-		Rv0101	0.41	+0.2
113,114	-		Rv0101	0.41	-1.8
113,396	-		Rv0101	0.45	-1.1
113,518	-		Rv0101	0.47	+1.4
113,571	+		Rv0101	0.47	-0.6
113,571	+		Rv0101	0.47	+1.2
113,572	-		Rv0101	0.47	+0.0
113,580	+		Rv0101	0.47	-0.2
113,581	-		Rv0101	0.47	+0.4
113,713	-		Rv0101	0.49	-0.4
113,828	-		Rv0101	0.51	+0.2
114,034	-		Rv0101	0.53	-0.8
114,049	+		Rv0101	0.54	+0.6
114,706	-		Rv0101	0.62	-0.0
114,706	-		Rv0101	0.62	+0.3
114,850	+		Rv0101	0.64	-0.4
114,859	-		Rv0101	0.64	-0.5
114,912	+		Rv0101	0.65	-0.2
114,913	-		Rv0101	0.65	-1.2
115,035	+		Rv0101	0.67	-0.9
115,035	+		Rv0101	0.67	+0.2
115,036	-		Rv0101	0.67	-0.2
115,078	+		Rv0101	0.67	-0.7
115,079	-		Rv0101	0.67	-1.4
115,079	-		Rv0101	0.67	+0.9
115,079	-		Rv0101	0.67	-0.5
115,079	-		Rv0101	0.67	+2.0
115,305	+		Rv0101	0.70	+0.7
115,340	-		Rv0101	0.71	-2.2
115,418	+		Rv0101	0.72	-0.2
115,419	-		Rv0101	0.72	+0.4
115,461	+		Rv0101	0.72	-0.7
115,462	-		Rv0101	0.72	+1.2
115,462	-		Rv0101	0.72	-2.2
115,563	+		Rv0101	0.74	+0.2
115,717	+		Rv0101	0.76	+1.0
115,858	+		Rv0101	0.78	+0.8
116,098	+		Rv0101	0.81	-0.3
116,153	-		Rv0101	0.82	+0.3
116,364	+		Rv0101	0.84	+0.3
116,365	-		Rv0101	0.84	+0.6
116,733	+		Rv0101	0.89	-0.5
116,734	-		Rv0101	0.89	-2.2
116,734	-		Rv0101	0.89	-1.7
117,039	+				-2.3
117,039	+				+0.3
117,169	-				-0.6
117,214	-				-0.0
117,214	-				+0.7
117,214	-				-1.4
117,517	+				+1.3
117,517	+				+0.5
117,518	-				+0.8
117,622	+				+1.1
117,622	+				-0.8
117,623	-				-0.4
117,641	-				-0.3
117,787	+				-0.5