Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3478

Experiment: pH 4.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 4.5
3,893,513	+		Rv3476c	0.85	-1.3
3,893,514	-		Rv3476c	0.85	-0.1
3,893,536	+		Rv3476c	0.86	+0.3
3,893,585	-		Rv3476c	0.90	+0.6
3,893,588	+				-0.6
3,893,608	+				-0.9
3,893,609	-				+0.4
3,893,617	+				-1.7
3,893,617	+				+0.7
3,894,273	+		Rv3477	0.61	+0.5
3,894,348	+		Rv3477	0.86	-1.3
3,894,846	+		Rv3478	0.36	-1.0
3,894,847	-		Rv3478	0.36	-1.5
3,894,847	-		Rv3478	0.36	-2.9
3,894,883	-		Rv3478	0.39	-2.5
3,895,082	-		Rv3478	0.55	-0.8
3,895,232	-		Rv3478	0.68	+0.1
3,895,940	+				-1.2
3,895,951	-				-0.4
3,895,951	-				-1.4
3,895,951	-				-0.6
3,896,147	+		Rv3479	0.11	+1.2
3,896,163	+		Rv3479	0.11	-0.7
3,896,261	+		Rv3479	0.14	-0.2
3,896,262	-		Rv3479	0.14	-0.4
3,896,406	+		Rv3479	0.19	-0.6