Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3476c

Experiment: pH 4.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 4.5
3,892,223	+				-0.3
3,892,223	+				+0.5
3,892,224	-				+0.8
3,892,356	-				-0.5
3,892,356	-				+0.3
3,892,372	+				+0.7
3,892,372	+				-0.2
3,892,372	+				-0.4
3,892,372	+				-2.2
3,892,414	+				-0.0
3,892,414	+				-0.1
3,892,414	+				-0.5
3,892,415	-				-0.5
3,892,415	-				-1.5
3,892,415	-				-0.8
3,892,415	-				+0.6
3,892,418	+				-0.2
3,892,447	+				+0.2
3,892,448	-				+1.0
3,892,517	+		Rv3476c	0.11	+1.8
3,892,528	+		Rv3476c	0.12	-3.3
3,892,720	+		Rv3476c	0.26	-0.4
3,892,735	+		Rv3476c	0.27	-0.0
3,892,736	-		Rv3476c	0.27	+1.8
3,892,739	+		Rv3476c	0.27	-0.1
3,892,741	+		Rv3476c	0.27	-0.2
3,892,742	-		Rv3476c	0.27	-1.1
3,892,742	-		Rv3476c	0.27	-1.1
3,892,921	+		Rv3476c	0.41	-1.3
3,892,922	-		Rv3476c	0.41	-0.7
3,892,922	-		Rv3476c	0.41	-1.3
3,892,926	-		Rv3476c	0.41	+0.1
3,893,284	+		Rv3476c	0.68	-0.5
3,893,285	-		Rv3476c	0.68	-1.2
3,893,346	-		Rv3476c	0.72	-0.3
3,893,513	+		Rv3476c	0.85	-1.3
3,893,514	-		Rv3476c	0.85	-0.1
3,893,536	+		Rv3476c	0.86	+0.3
3,893,585	-		Rv3476c	0.90	+0.6
3,893,588	+				-0.6
3,893,608	+				-0.9
3,893,609	-				+0.4
3,893,617	+				-1.7
3,893,617	+				+0.7
3,894,273	+		Rv3477	0.61	+0.5
3,894,348	+		Rv3477	0.86	-1.3