Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3159c

Experiment: pH 4.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 4.5
3,526,408	+		Rv3158	0.39	+0.1
3,526,572	-		Rv3158	0.49	-0.3
3,526,572	-		Rv3158	0.49	-0.3
3,526,572	-		Rv3158	0.49	+0.5
3,526,574	+		Rv3158	0.49	+1.7
3,526,574	+		Rv3158	0.49	+0.4
3,526,575	-		Rv3158	0.49	-0.8
3,526,575	-		Rv3158	0.49	+0.2
3,526,575	-		Rv3158	0.49	+1.7
3,526,705	+		Rv3158	0.57	+0.4
3,526,706	-		Rv3158	0.57	-1.2
3,526,818	+		Rv3158	0.64	+0.4
3,526,818	+		Rv3158	0.64	-0.3
3,526,818	+		Rv3158	0.64	+0.2
3,526,819	-		Rv3158	0.64	-0.6
3,526,819	-		Rv3158	0.64	-0.1
3,526,819	-		Rv3158	0.64	+3.6
3,526,819	-		Rv3158	0.64	+0.8
3,526,829	-		Rv3158	0.65	+1.8
3,526,856	+		Rv3158	0.67	-0.1
3,526,861	-		Rv3158	0.67	+0.4
3,526,861	-		Rv3158	0.67	+0.3
3,526,861	-		Rv3158	0.67	+4.5
3,527,040	+		Rv3158	0.78	-0.2
3,527,197	+		Rv3158	0.88	+0.8
3,527,203	+		Rv3158	0.89	-1.8
3,527,204	-		Rv3158	0.89	-0.3
3,527,300	+				-0.8
3,527,300	+				+0.4
3,527,309	+				+2.0
3,527,309	+				+1.4
3,527,589	-		Rv3159c	0.11	+0.3
3,527,624	-		Rv3159c	0.13	-0.6
3,528,514	-		Rv3159c	0.63	+1.8
3,528,514	-		Rv3159c	0.63	-2.2
3,528,551	-		Rv3159c	0.65	-0.6
3,528,745	+		Rv3159c	0.76	-1.9
3,528,745	+		Rv3159c	0.76	-0.7
3,528,746	-		Rv3159c	0.76	+0.8
3,528,746	-		Rv3159c	0.76	-0.4
3,528,746	-		Rv3159c	0.76	+0.3
3,528,821	+		Rv3159c	0.81	-0.6
3,528,821	+		Rv3159c	0.81	-0.7
3,528,822	-		Rv3159c	0.81	-0.7
3,528,949	+		Rv3159c	0.88	+2.8
3,529,234	+				-2.2
3,529,234	+				-0.3
3,529,234	+				-1.3
3,529,234	+				-1.4
3,529,235	-				+0.2
3,529,247	-				-0.0
3,529,340	-				-1.1
3,529,606	-		Rv3160c	0.42	-1.0
3,529,838	-		Rv3160c	0.78	+0.8
3,529,991	+				+0.0
3,529,991	+				-2.4
3,530,039	+				-0.8
3,530,073	+				-0.4
3,530,073	+				-0.2