Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3156

Experiment: pH 4.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 4.5
3,521,313	+		Rv3154	0.22	+0.0
3,521,313	+		Rv3154	0.22	+0.7
3,521,314	-		Rv3154	0.22	+2.0
3,521,314	-		Rv3154	0.22	+0.0
3,521,314	-		Rv3154	0.22	+1.3
3,521,314	-		Rv3154	0.22	-1.0
3,521,314	-		Rv3154	0.22	-0.0
3,521,362	-		Rv3154	0.28	+0.9
3,521,770	-		Rv3154	0.80	+1.8
3,521,820	+		Rv3154	0.86	-0.2
3,521,909	-				+0.1
3,521,940	-				+0.9
3,521,940	-				+1.8
3,522,047	-		Rv3155	0.41	+0.8
3,522,210	+				+0.5
3,522,258	+				+0.2
3,522,259	-				+0.5
3,522,570	+		Rv3156	0.18	+0.4
3,522,660	+		Rv3156	0.22	-0.0
3,522,660	+		Rv3156	0.22	+0.8
3,522,661	-		Rv3156	0.22	+1.1
3,522,706	-		Rv3156	0.25	+0.8
3,522,796	+		Rv3156	0.30	-0.2
3,522,806	+		Rv3156	0.30	+1.0
3,522,807	-		Rv3156	0.30	+0.1
3,522,807	-		Rv3156	0.30	+0.9
3,522,821	+		Rv3156	0.31	-0.6
3,522,822	-		Rv3156	0.31	-0.2
3,523,035	+		Rv3156	0.42	+0.0
3,523,062	+		Rv3156	0.44	-0.0
3,523,063	-		Rv3156	0.44	+0.9
3,523,285	+		Rv3156	0.55	+0.1
3,523,821	+		Rv3156	0.83	-0.8
3,523,822	-		Rv3156	0.83	+0.2
3,524,558	+		Rv3157	0.26	+0.2
3,524,558	+		Rv3157	0.26	+0.7
3,524,777	+		Rv3157	0.39	+0.8
3,525,114	-		Rv3157	0.59	+0.6