Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3029c

Experiment: pH 4.5

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRv3028c and Rv3029c are separated by 38 nucleotidesRv3029c and Rv3030 are separated by 230 nucleotides Rv3028c: Rv3028c - Probable electron transfer flavoprotein (alpha-subunit) FixB (alpha-ETF) (electron transfer flavoprotein large subunit) (ETFLS), at 3,387,075 to 3,388,031 Rv3028c Rv3029c: Rv3029c - Probable electron transfer flavoprotein (beta-subunit) FixA (beta-ETF) (electron transfer flavoprotein small subunit) (ETFSS), at 3,388,070 to 3,388,870 Rv3029c Rv3030: Rv3030 - Conserved protein, at 3,389,101 to 3,389,925 Rv3030 Position (kb) 3388 3389Strain fitness (log2 ratio) -2 -1 0 1at 3387.076 kb on + strandat 3388.072 kb on - strandat 3388.072 kb on - strandat 3388.072 kb on - strandat 3388.957 kb on - strandat 3389.004 kb on + strandat 3389.005 kb on - strandat 3389.048 kb on - strandat 3389.096 kb on + strandat 3389.169 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction pH 4.5
remove
3,387,076 + -0.6
3,388,072 - +0.9
3,388,072 - +0.6
3,388,072 - +1.5
3,388,957 - +0.4
3,389,004 + +1.7
3,389,005 - -2.7
3,389,048 - -0.4
3,389,096 + -2.3
3,389,169 + -0.6

Or see this region's nucleotide sequence