Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2718c

Experiment: pH 4.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 4.5
3,029,448	-		Rv2716	0.40	+1.8
3,029,448	-		Rv2716	0.40	+0.2
3,029,487	+		Rv2716	0.46	+0.6
3,029,487	+		Rv2716	0.46	-0.9
3,029,616	+		Rv2716	0.65	-0.1
3,029,617	-		Rv2716	0.65	-0.1
3,030,153	+		Rv2717c	0.58	+1.8
3,030,210	+		Rv2717c	0.69	+1.8
3,030,226	+		Rv2717c	0.73	-0.1
3,030,227	-		Rv2717c	0.73	-0.9
3,030,259	-		Rv2717c	0.79	-0.6
3,030,283	-		Rv2717c	0.84	-0.0
3,030,428	+				-0.0
3,030,428	+				-0.4
3,030,512	+		Rv2718c	0.21	-1.3
3,030,512	+		Rv2718c	0.21	+0.2
3,030,512	+		Rv2718c	0.21	-0.9
3,030,513	-		Rv2718c	0.22	-1.0
3,030,513	-		Rv2718c	0.22	-1.3
3,030,517	-		Rv2718c	0.22	-0.6
3,030,735	-		Rv2718c	0.69	-0.8
3,030,929	+				-0.5
3,030,929	+				-0.4
3,030,930	-				-0.7
3,030,930	-				-1.7
3,030,930	-				-0.5
3,030,930	-				+1.8
3,030,930	-				-0.5
3,031,193	+		Rv2719c	0.31	-0.1
3,031,300	+		Rv2719c	0.52	+0.5
3,031,301	-		Rv2719c	0.52	+1.0
3,031,398	+		Rv2719c	0.72	+0.0
3,031,513	+				+0.8
3,031,775	+				+0.3
3,031,775	+				+0.9
3,031,775	+				-0.1
3,031,776	-				+0.8