Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2618

Experiment: pH 4.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 4.5
2,945,603	+		Rv2616	0.54	-0.3
2,945,603	+		Rv2616	0.54	-0.2
2,945,603	+		Rv2616	0.54	-0.9
2,945,604	-		Rv2616	0.55	-1.2
2,945,604	-		Rv2616	0.55	+0.0
2,945,813	+				-1.2
2,945,814	-				-1.1
2,946,071	-		Rv2617c	0.51	+2.8
2,946,071	-		Rv2617c	0.51	-0.5
2,946,124	+		Rv2617c	0.63	-0.4
2,946,124	+		Rv2617c	0.63	-0.8
2,946,124	+		Rv2617c	0.63	-1.7
2,946,124	+		Rv2617c	0.63	-0.8
2,946,124	+		Rv2617c	0.63	-0.4
2,946,124	+		Rv2617c	0.63	-2.9
2,946,124	+		Rv2617c	0.63	+0.0
2,946,124	+		Rv2617c	0.63	+0.5
2,946,124	+		Rv2617c	0.63	+0.5
2,946,125	-		Rv2617c	0.63	-0.2
2,946,216	+		Rv2617c	0.84	+0.8
2,946,217	-		Rv2617c	0.84	-0.2
2,946,217	-		Rv2617c	0.84	+0.8
2,946,220	+		Rv2617c	0.85	+0.5
2,946,220	+		Rv2617c	0.85	+0.0
2,946,220	+		Rv2617c	0.85	+0.2
2,946,220	+		Rv2617c	0.85	-0.2
2,946,220	+		Rv2617c	0.85	+0.6
2,946,220	+		Rv2617c	0.85	-1.7
2,946,220	+		Rv2617c	0.85	+1.2
2,946,220	+		Rv2617c	0.85	+0.4
2,946,220	+		Rv2617c	0.85	-1.1
2,946,221	-		Rv2617c	0.85	-0.4
2,946,221	-		Rv2617c	0.85	+0.3
2,946,221	-		Rv2617c	0.85	+0.1
2,946,221	-		Rv2617c	0.85	-0.7
2,946,287	+				+0.4
2,946,288	-				-1.9
2,946,288	-				-3.0
2,946,288	-				+0.1
2,946,288	-				-1.6
2,946,335	-				-0.2
2,946,588	-		Rv2618	0.23	-0.8
2,946,641	+		Rv2618	0.31	-2.3
2,946,641	+		Rv2618	0.31	-0.8
2,946,786	-		Rv2618	0.52	-1.0
2,946,875	+		Rv2618	0.65	-0.5
2,946,875	+		Rv2618	0.65	-1.7
2,946,881	+		Rv2618	0.66	-0.9
2,946,982	+		Rv2618	0.81	-1.5
2,947,074	+				-0.7
2,947,075	-				-1.4
2,947,075	-				-0.7
2,947,075	-				-0.6
2,947,199	+		Rv2619c	0.29	-1.4
2,947,200	-		Rv2619c	0.29	+4.6
2,947,200	-		Rv2619c	0.29	-0.8
2,947,200	-		Rv2619c	0.29	-2.2
2,947,475	-				-0.1
2,947,481	-				+0.5
2,947,513	+		Rv2620c	0.12	-0.3
2,947,513	+		Rv2620c	0.12	-1.0
2,947,514	-		Rv2620c	0.12	+0.2
2,947,529	+		Rv2620c	0.16	-0.3
2,947,529	+		Rv2620c	0.16	-0.1
2,947,529	+		Rv2620c	0.16	+1.8
2,947,529	+		Rv2620c	0.16	+1.3
2,947,529	+		Rv2620c	0.16	+0.5
2,947,530	-		Rv2620c	0.16	+1.8
2,947,530	-		Rv2620c	0.16	-0.5
2,947,530	-		Rv2620c	0.16	+0.3
2,947,530	-		Rv2620c	0.16	-0.4
2,947,573	+		Rv2620c	0.26	-0.4
2,947,573	+		Rv2620c	0.26	-0.2
2,947,574	-		Rv2620c	0.26	-0.0
2,947,574	-		Rv2620c	0.26	-0.3
2,948,007	+		Rv2621c	0.18	+0.3
2,948,007	+		Rv2621c	0.18	-0.7