Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2403c

Experiment: pH 4.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 4.5
2,699,558	+		Rv2402	0.53	+0.2
2,699,616	-		Rv2402	0.56	-0.3
2,699,654	+		Rv2402	0.58	+0.1
2,699,655	-		Rv2402	0.58	-0.6
2,699,655	-		Rv2402	0.58	+0.0
2,699,703	-		Rv2402	0.61	-1.2
2,699,742	+		Rv2402	0.63	-0.4
2,699,743	-		Rv2402	0.63	-0.1
2,699,743	-		Rv2402	0.63	-0.4
2,700,006	-		Rv2402	0.77	-1.6
2,700,140	+		Rv2402	0.84	-0.7
2,700,214	-		Rv2402	0.87	-0.2
2,700,455	+				+0.4
2,700,455	+				-0.7
2,700,709	+		Rv2403c	0.23	+0.4
2,701,439	-				-2.1
2,701,585	+		Rv2404c	0.15	-0.6
2,701,585	+		Rv2404c	0.15	-1.0
2,701,586	-		Rv2404c	0.15	-1.2
2,701,706	-		Rv2404c	0.21	-1.2
2,701,771	+		Rv2404c	0.25	-2.3
2,701,801	+		Rv2404c	0.26	-1.4
2,701,801	+		Rv2404c	0.26	-1.3
2,701,802	-		Rv2404c	0.26	-1.6
2,701,802	-		Rv2404c	0.26	+1.8
2,701,802	-		Rv2404c	0.26	-1.0
2,701,984	+		Rv2404c	0.36	+0.6
2,702,122	+		Rv2404c	0.43	-0.9
2,702,122	+		Rv2404c	0.43	-2.5
2,702,122	+		Rv2404c	0.43	-1.1