Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2045c

Experiment: pH 4.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 4.5
2,288,846	-		Rv2043c	0.29	-1.7
2,288,958	+		Rv2043c	0.49	-0.7
2,289,141	+		Rv2043c	0.82	-0.9
2,289,241	+				-0.7
2,289,241	+				-0.4
2,289,242	-				-0.5
2,289,252	+				-0.2
2,289,253	-				-0.6
2,289,306	+				-1.5
2,289,307	-				+1.8
2,289,391	+		Rv2044c	0.34	+0.1
2,289,578	-				+2.1
2,289,612	+				-1.4
2,289,794	+				-1.1
2,289,926	+		Rv2045c	0.16	-1.0
2,290,007	+		Rv2045c	0.21	+1.2
2,290,013	+		Rv2045c	0.21	-1.4
2,290,019	+		Rv2045c	0.22	-0.8
2,290,020	-		Rv2045c	0.22	-0.0
2,290,020	-		Rv2045c	0.22	-1.4
2,290,175	-		Rv2045c	0.32	-1.4
2,290,319	+		Rv2045c	0.41	-0.9
2,290,556	-		Rv2045c	0.57	+0.3
2,290,793	+		Rv2045c	0.72	-0.6
2,290,793	+		Rv2045c	0.72	-1.5
2,290,829	+		Rv2045c	0.74	-0.4
2,290,830	-		Rv2045c	0.75	-0.6
2,290,886	-		Rv2045c	0.78	-1.1
2,291,100	-				+3.4
2,291,190	+				-0.5
2,291,191	-				-0.3
2,291,340	-		Rv2046	0.11	-0.8
2,291,557	-		Rv2046	0.44	-0.6
2,291,726	-		Rv2046	0.70	-0.7
2,291,818	+		Rv2046	0.84	+0.6
2,291,957	+				-0.3
2,291,957	+				+1.2
2,291,957	+				+0.5
2,291,958	-				+0.0
2,292,082	-				-0.2
2,292,082	-				-0.3
2,292,183	-				-1.3