Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1935c

Experiment: pH 4.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 4.5
2,185,323	+		Rv1934c	0.30	-0.4
2,185,365	-		Rv1934c	0.33	+0.6
2,185,365	-		Rv1934c	0.33	+0.5
2,186,175	+				+1.5
2,186,176	-				+0.0
2,186,279	+				-0.6
2,186,594	+		Rv1935c	0.41	-1.2
2,186,771	+		Rv1935c	0.59	+0.0
2,186,772	-		Rv1935c	0.59	+0.4
2,186,772	-		Rv1935c	0.59	-0.3
2,186,774	+		Rv1935c	0.60	+0.7
2,186,775	-		Rv1935c	0.60	+0.5
2,187,083	+				+1.5
2,187,083	+				-0.1
2,187,084	-				+0.1
2,187,084	-				-1.4
2,187,398	-				+0.7
2,187,398	-				-0.2
2,187,435	+				-0.9
2,187,658	-		Rv1936	0.25	-0.5
2,187,984	+		Rv1936	0.54	-3.6
2,187,985	-		Rv1936	0.54	+0.4
2,187,985	-		Rv1936	0.54	+0.2
2,187,985	-		Rv1936	0.54	-0.2
2,187,985	-		Rv1936	0.54	-0.2
2,188,143	+		Rv1936	0.68	-0.2