Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1446c

Experiment: pH 4.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 4.5
1,623,481	+		Rv1444c	0.47	-0.8
1,623,482	-		Rv1444c	0.47	-0.1
1,624,237	+		Rv1445c	0.70	-2.1
1,624,449	-				-0.5
1,624,449	-				-1.0
1,624,449	-				+0.0
1,624,830	+		Rv1446c	0.41	+1.8
1,624,830	+		Rv1446c	0.41	-2.2
1,624,830	+		Rv1446c	0.41	-0.4
1,624,830	+		Rv1446c	0.41	+0.8
1,625,420	-				+0.2
1,625,484	-				-1.0
1,625,484	-				+0.2
1,625,626	+		Rv1447c	0.13	+1.1
1,625,882	-		Rv1447c	0.30	-0.8